Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0203 ATCGAGGAAGATCAAAATAGAGGGGAGGGAACATGTTTGTTGCATAGCAGAAGCAGTGAAATGATGGTGGCCAGAAGAAGAAGTTACAGGAACTTGGTCGCCATCAGCTGGTCTGCAGAGGAGTTGATATCTTTTTTCCTTTTGTACTCATTTGTGTTTTTTATTTCTGTAGTTAATTGCATTCCTAAAGATACCTTAGAATTTAAGAGCTGCATAATTGATGAGAGAGGGGATACTCTTATTTCGGCAGGAGCAAGATTTGAACTCGGATTTTTTACACCGTATGGCAGCTCTAAAAGGGGAAGATATGTGGGAATATGGTACTACAAATCAAATCCAAGAACGGTCGTTTGGGTTGCCAATAGAGACAGGCCACTTTTGGGTTCAGATGGTGTCTTTACCATTGAAGATGATGGCAACCTCAAAGTATCCGATGGAAATTGGAATCTTTATTGGTCGACAAAAATTGGTCATCCAATAATCGGTTCCAGGACCCTGAAGCTAATGGATAATGGGAATCTGATTTTGAGCTATGAAGATCAAGAAGACTTCTCTGAGAAAATCCTCTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGGTAATGGATGATAACTTAGTGCTGACTTCATGGAAGAGCTATGAGGACCCCGGTCAAGGGAACTTCACTTTTCAGCTAGACCAAGACGGTGGCCAATATGTCATTTGGAAGAGATCGGTTAAATATTGGAAAAGTGGTGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTGTTGTCAAATTTCTCATCGAAAGGTGTCTCCAACGTCTCCGTGCCACGTCTGACATCATCATTATACATTGATACAAGGCTAGTATTGAACAGCTCCGGCCAGCTTCAATATCTAAACTGGGATGATCACAGAGTCTGGTCTCAGATTTGGGTGGAGCCAAGAGATAGGTGCAGTGTGTATAATGTGTGCGGAAATTTTGCTAGCTGTAATAGTAAGGGCGGTGTGGCTTGCAAATGTCTCCCTGGTTTCGAGCCTGCCTCTCCAGAGAGTTGGAATATCGGAGATTATTCTGGTGGATGCAACAGAAAGTCACCAATGTGTGGTATCGACGATGAAAGCGACACGTTCTTGAGTCTAAAGATGATGAAATCTGGGAACCCAGACTTCCAGTTCAATGCAAAGGATGACTCTGATTGCAAGTTGGAGTGTCTTAACAACTGCCAGTGCCAGGCTTACTCGTATGTGGAAGCTAATATCACAAGGCACAGTGGGATTGATAATTCCGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTGAGGATGAGTTTGATAATGGCCGTGACCTCAACGTCCGAGTAGCAGTTCGAGATCTAGAACTGACGGTCAGGAATTGTGAAACATGTGGCACAAATCTCATTCCTTACCCGCTTAGCACCGGACCTAACTGTGGCGACCCCATGTACTTGAGTTTTAACTGCAATGTGACTACTGGCCAGGTAACCTTTGCAGCACCAGGTGGAATGTATAAAGTTAAATTCATCAATTCAGAAGCACGAAAATTTGTCATTCAAACTAACGATGCTGGTGATTGTGGTGATAAGAATTGGATAATCAAAACCCTTCAGCTGAACCAGTCGTCTCCATTCCATGTTACCAACTGGTGCAACTTTAAGGAGACCAATCCAGAGAACTTTTCTCTGAAAACCAGCAACGAAGTTGAAATCGGTTGGGAGCCGCCATTGGAACCCACTTGTTCTTCATCTACCGACTGCAAAGACTGGCCTTATTCAACTTGCAACATGACTAAAGATGGAAATCAAAGATGCCTTTGTATAACAAACTTCCATTGGAATGGCTGGGGCTTGAACTGCAGTACAGATCACAACAAAGAGAAGGATGGAAGAGGAAAAATGACCTTCTCTGTGATTATCGTTGCGACAATCATATGTATAGTCTTTCTGATGATTCTCTCAAGTACTGTATTTTATATTTACTTCTCCAAGACTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGAATCAATGCTTCACTTGTATGACAATGAGAGACGTGTCAAAGACCTGATTGAATCAGGCCGATTTAAGGAAGATGACACAAATGGAATAGACATACCATTTTTTGATTTGGAAACAATTCTTATTGCCACAGAGAACTTCTCAAATGCAAATAAGCTTGGACAGGGAGGTTTCGGGCCAGTTTACAAGGGCAAGTTTCCTAGTGGTCAGGAGATTGCTGTAAAGAGACTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAGGAATGAGGTTTTGTTGATCGCGAAACTTCAGCATCGAAATCTCGTAAGACTTTTGGGCTATTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATATATGCCAAACAAAAGCTTAGATGCGTTTATATTTGATCAAAAGCAGAGGATACTATTAGATTGGGACATGCGCTTCAACGTCATTTTAGGAATCGCTCGTGGCCTTCTTTATCTTCACCAGGATTCAAGGTTGAGAATCATTCATAGAGATTTGAAGACGAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCGGATTTTGGCCTGGCCAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTAGGGACTTATGGATACATGTCACCGGAGTACGCACTGGATGGCTTATTTTCAGTTAAATCTGACGTCTTTAGCTTCGGTGTAGTTGTGATTGAAATCATCAGTGGAAAAAGGAACACGGGATTCTATCACTCGGAGAAAGCTTTGAGTCTTCTAGGCTATGCATGGGATTTGTGGATAACAGGCAAAGGCTTGGACTTGATGGAGCAAACAGTGAGCGAGAACTGCAAAAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGTGTGCAGGAAGATCCATGGGATCGACCCACCATGTCGAATGTCGTCTTCATGCTCGGCAGTGAAACTGCGACTCTCCCATCTCCAAAACCACCAGCATTCATCGTGCGGAGGTGCCCCTCGAGCCGAGCTTCGTCCTCCACCAAACCAGAAACCTTCTCCCACAATGAGTTGACAGTCACCTTACAAGAAGGTAGATAG 3174 42.88 IEEDQNRGEGTCLLHSRSSEMMVARRRSYRNLVAISWSAEELISFFLLYSFVFFISVVNCIPKDTLEFKSCIIDERGDTLISAGARFELGFFTPYGSSKRGRYVGIWYYKSNPRTVVWVANRDRPLLGSDGVFTIEDDGNLKVSDGNWNLYWSTKIGHPIIGSRTLKLMDNGNLILSYEDQEDFSEKILWQSFDYPTDTFLPGMVMDDNLVLTSWKSYEDPGQGNFTFQLDQDGGQYVIWKRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKGVSNVSVPRLTSSLYIDTRLVLNSSGQLQYLNWDDHRVWSQIWVEPRDRCSVYNVCGNFASCNSKGGVACKCLPGFEPASPESWNIGDYSGGCNRKSPMCGIDDESDTFLSLKMMKSGNPDFQFNAKDDSDCKLECLNNCQCQAYSYVEANITRHSGIDNSACWIWSGDLNNLEDEFDNGRDLNVRVAVRDLELTVRNCETCGTNLIPYPLSTGPNCGDPMYLSFNCNVTTGQVTFAAPGGMYKVKFINSEARKFVIQTNDAGDCGDKNWIIKTLQLNQSSPFHVTNWCNFKETNPENFSLKTSNEVEIGWEPPLEPTCSSSTDCKDWPYSTCNMTKDGNQRCLCITNFHWNGWGLNCSTDHNKEKDGRGKMTFSVIIVATIICIVFLMILSSTVFYIYFSKTGLIERQESRGNSQKESMLHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILIATENFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFRNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKQRILLDWDMRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGLFSVKSDVFSFGVVVIEIISGKRNTGFYHSEKALSLLGYAWDLWITGKGLDLMEQTVSENCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFIVRRCPSSRASSSTKPETFSHNELTVTLQEGR 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1342039 1346159 + MC04g0175 Mch4g0203 684915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0203 1057 SMART ntp_6 379 462 IPR003609 -
Mch4g0203 1057 Gene3D - 63 193 IPR036426 -
Mch4g0203 1057 ProSiteProfiles Protein kinase domain profile. 739 1017 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0203 1057 CDD EGF_CA 323 352 - -
Mch4g0203 1057 SMART serkin_6 739 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0203 1057 SMART blect_4 73 196 IPR001480 -
Mch4g0203 1057 ProSiteProfiles Bulb-type lectin domain profile. 65 189 IPR001480 -
Mch4g0203 1057 CDD STKc_IRAK 745 1010 - -
Mch4g0203 1057 Pfam D-mannose binding lectin 115 213 IPR001480 -
Mch4g0203 1057 ProSiteProfiles EGF-like domain profile. 321 357 IPR000742 -
Mch4g0203 1057 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 815 1018 - -
Mch4g0203 1057 Pfam S-locus glycoprotein domain 247 354 IPR000858 GO:0048544(InterPro)
Mch4g0203 1057 SUPERFAMILY alpha-D-mannose-specific plant lectins 116 221 IPR036426 -
Mch4g0203 1057 SUPERFAMILY Protein kinase-like (PK-like) 723 1040 IPR011009 -
Mch4g0203 1057 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 704 814 - -
Mch4g0203 1057 Pfam PAN-like domain 378 447 IPR003609 -
Mch4g0203 1057 CDD PAN_AP_plant 375 463 - -
Mch4g0203 1057 Pfam Domain of unknown function (DUF3403) 1012 1057 IPR021820 GO:0004674(InterPro)
Mch4g0203 1057 CDD B_lectin 77 196 IPR001480 -
Mch4g0203 1057 Pfam Protein tyrosine and serine/threonine kinase 742 1007 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0203 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 860 872 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0203 1057 MobiDBLite consensus disorder prediction 1033 1057 - -
Mch4g0203 1057 Gene3D Phosphorylase Kinase; domain 1 703 814 - -
Mch4g0203 1057 Gene3D Transferase(Phosphotransferase) domain 1 815 1017 - -
Mch4g0203 1057 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 54 1024 - -
Mch4g0203 1057 ProSiteProfiles PAN/Apple domain profile. 375 463 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1625 Mch-Chr3:18060927 Mch4g0203 Mch-Chr4:1342039 2.34E-111 dispersed
Mch4g0203 Mch-Chr4:1342039 Mch9g0055 Mch-Chr9:443241 1.07E-113 dispersed
Mch4g0198 Mch-Chr4:1323098 Mch4g0203 Mch-Chr4:1342039 2.29E-65 proximal
Mch9g0396 Mch-Chr9:2973891 Mch4g0203 Mch-Chr4:1342039 4.66E-124 transposed
Mch2g0602 Mch-Chr2:4134040 Mch4g0203 Mch-Chr4:1342039 8.25E-308 wgd
Mch3g1183 Mch-Chr3:15061380 Mch4g0203 Mch-Chr4:1342039 2.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77309 PF07714 PK_Tyr_Ser-Thr 1.00E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0203 - - - 0.0