Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0233 ATGCCAGCCGGAATGATGATTCCAGCCAGAAACGCGCCGTCGATGATCGGAAGGAATGGGAATAATGTCGGCGTTTTCGGCTCTCCGGCGAGTCTAGTTCTTGGGGGGCAGCTGCAGGGGCTGGATATGGGAGGAAACGCGTTGGGGGAAAGCGATTTTGGGCGAATGAGAGAAGCGGAAGATTTCGACAGTGTAACAAAATCGAGCAGCGAGAATCACGAGGCTGCTTCTGGGGACGACCAAGACCACAACCGCCCCAAGAAGAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAGTTGGGTTTGGAGCCATTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGAGACACGAAAACACCCAACTGAGAACAGAAAATGAGAAGCTTCGGGCTGATAATATGAGGTATAGAGAAGCTCTTAGTAATGCCACGTGTCCTAATTGTGGAGGCCCGACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTCAGACTCGAAAATTCTCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATATGTAGGGAAGCCAGTATCGAACTACCCTACTCTCCTTTCCCCATCCATCCCTTCACGTCCTCTAGACCTCGGAATGGGAAGCTATGGAGGACATGATTCAGGGATCGGAGGAGGTGGTGGCGAAATGTACGGGGCAGCGGACCTTCTACGGTCCATAAGTGCGCCGTCGGATGCTGATAAGCCCATTATCATCGAGCTTGCAGTGGCGGCCATGGAGGAACTGGTGAGGATGGCTCAAATGGGCGAGCCGTTGTGGATCACAGGGCTGGATGGCTCAACCGCAGTGCTGAATGAAGATGAATATATTAGAACGTTTCCCAGAGGCATTGGACCTAAACCATCTGGGTTTACCTGTGAAGCTTCTCGGGCTTCTGCTGTTGTCATCATGAACCATATTAACCTTGTTGAGATGCTCATGGATGTCAATCAGTGGTCAAGCGTATTCAGTGGAATTGTGTCTAGAGGCGTGACATTAGAAGTATTATCAACCGGAGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCGGAATTGCAAGTTCCTTCGCCGCTGGTTCCAACTCGGGAGAGCTATTTCGTAAGGTACTGTAAACAGCATGGGGAGGGAAATTGGGCTGTGGTCGACGTGTCGTTGGACAACTTACGCCCAGCCCCCGCCCTCAGATGCAGAAGGCGCCCCTCCGGCTGCTTAATCCAAGAAATGCCAAATGGCTATTCTAAGGTTACGTGGGTTGAGCACGTTGAGGTGGACGATCGAGGTGTCCATACTTTGTACAATCAGCTTGTTAGCTCCGGCCACGCGTTCGGTGCCAAGCGTTGGATTGCCACATTGGATCGCCAGTGCGAACGCCTCGCCAGTGCCATGGCCACGAGTATTCCCAACGGCGATGCTGGTGTGATAACGAATCAAGAAGGGAGGAAGAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTCTGCGGAGGAGTGAGCGCGTCGACCACACACACCTGGACCACACTCTCCGGGACCGGGGCTGATGACGTCAGGGTTATGACAAGGAAGAGCGTGGACGATCCCGGCAGACCCCCTGGCATTGTTCTCAGCGCTGCCACTTCCTTCTGGCTCCCGATTCCTCCCAATAGAGTCTTCCATTTCCTTCGAGATGAAAATTCCCGAAATGAGTGGGATATTCTTTCGAACGGTGGAGTAGTGCAAGAAATGGCCCACATTGCCAATGGCCGTGACACTGGCAACTGCGTCTCCTTGCTCAGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGCTGATATTACAAGAGAGCAGCACGGATGAAACGGCTTCGTTTGTGATCTACGCGCCGGTGGACATAGTGGCAATCAACGTGGTGCTGAACGGCGGAGATCCGGACTACGTGGCCCTCCTCCCCTCCGGATTTGCCATCCTTCCTGACGGAACCGCCGCGGCCGGCGAACCTGGGTCCGGCGGCAGCGGCTCGCTTTTGACGGTTGCGTTTCAGATCTTGGTTGACTCGGTTCCCACGGCTAAACTTTCTCTGGGTTCGGTTGCAACGGTTAACAACCTCATTGCCTGCACTGTTGAGAGGATTAAAGCCTCTTTATCGTGCGACAATCACTGA 2280 52.5 MPAGMMIPARNAPSMIGRNGNNVGVFGSPASLVLGGQLQGLDMGGNALGESDFGRMREAEDFDSVTKSSSENHEAASGDDQDHNRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENSRLREEIDRISAIAAKYVGKPVSNYPTLLSPSIPSRPLDLGMGSYGGHDSGIGGGGGEMYGAADLLRSISAPSDADKPIIIELAVAAMEELVRMAQMGEPLWITGLDGSTAVLNEDEYIRTFPRGIGPKPSGFTCEASRASAVVIMNHINLVEMLMDVNQWSSVFSGIVSRGVTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGNWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHTLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIPNGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPIPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDETASFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAAAGEPGSGGSGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNH 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1496817 1503006 - MC04g0193 Mch4g0233 684945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0233 759 SUPERFAMILY Bet v1-like 521 751 - -
Mch4g0233 759 SMART START_1 282 502 IPR002913 GO:0008289(InterPro)
Mch4g0233 759 SMART HOX_1 86 149 IPR001356 GO:0003677(InterPro)
Mch4g0233 759 ProSiteProfiles START domain profile. 273 505 IPR002913 GO:0008289(InterPro)
Mch4g0233 759 Coils Coil 151 171 - -
Mch4g0233 759 Gene3D - 318 499 IPR023393 -
Mch4g0233 759 Pfam START domain 283 502 IPR002913 GO:0008289(InterPro)
Mch4g0233 759 FunFam Homeobox-leucine zipper protein GLABRA 2 282 501 - -
Mch4g0233 759 CDD homeodomain 88 146 IPR001356 GO:0003677(InterPro)
Mch4g0233 759 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch4g0233 759 MobiDBLite consensus disorder prediction 59 86 - -
Mch4g0233 759 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
Mch4g0233 759 SUPERFAMILY Bet v1-like 274 504 - -
Mch4g0233 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 756 IPR042160 -
Mch4g0233 759 CDD START_ArGLABRA2_like 277 501 - -
Mch4g0233 759 FunFam Homeobox-leucine zipper protein HDG1 74 161 - -
Mch4g0233 759 Gene3D - 62 144 - -
Mch4g0233 759 Pfam Homeodomain 88 143 IPR001356 GO:0003677(InterPro)
Mch4g0233 759 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677(InterPro)
Mch4g0233 759 MobiDBLite consensus disorder prediction 59 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0172 Mch-Chr10:1029677 Mch4g0233 Mch-Chr4:1496817 1.82E-237 dispersed
Mch11g1166 Mch-Chr11:8194781 Mch4g0233 Mch-Chr4:1496817 1.04E-132 dispersed
Mch4g0233 Mch-Chr4:1496817 Mch7g0709 Mch-Chr7:11725418 8.39E-272 dispersed
Mch3g1788 Mch-Chr3:19077146 Mch4g0233 Mch-Chr4:1496817 7.88E-221 transposed
Mch6g2205 Mch-Chr6:24307682 Mch4g0233 Mch-Chr4:1496817 8.82E-210 transposed
Mch8g2240 Mch-Chr8:25551823 Mch4g0233 Mch-Chr4:1496817 2.01E-190 transposed
Mch1g1771 Mch-Chr1:18089436 Mch4g0233 Mch-Chr4:1496817 0 wgd
Mch2g0634 Mch-Chr2:4332703 Mch4g0233 Mch-Chr4:1496817 0 wgd
Mch3g1219 Mch-Chr3:15350213 Mch4g0233 Mch-Chr4:1496817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43130 PF01852 START 1.70E-56 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0233 K09338 - csv:101219415 1310.82