Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0236 | ATGAGAAAGTTTGCAGCTCTAGCGCTGCGGACTTTGGTATGGCTGCTTCTCACTGGTCCGATCTGGTGCCAAAAGCCTGCCGTAAATATTGGTGCGGTTTTTACTTTCAATTCCGTTATTGGTAGAGCTGCAAAGCCAGCCATGGAAGCAGCAATCTCCCACATAAACGCGGACCCCAAAATTTTGGATGGGACACAGCTGAAGTTGCTGATGGAGGACGCTAATTGCAGTGGCTTCTTGGGCACCGTTGGAGCTTTGCAGGTACTGGAGAAAGAGGTTGTGGCCATCATTGGCCCACAGTCCTCTGTGGTGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAAGTATCATATGGTGCCACTGATCCATCATTATCAAGTCTTCAACTCCCCTTTTTCCTTCGAACTGCTTTAAGTGACTCGTACCAAATGGCTGCCGTGGCTGACTTGATTGTTTATTATGGGTGGAAAGAGGTCATCGCTATATATTTGGATGATGATTATGGGAGAAATGGAATATCTTCCTTAGGTGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATCAATTTGCCTTGCCTTCTCTGGCTAATCTAAGTCAGATCACGGAGGCACTTAATAATTCTAAATTGCTTGGTCCACGCGTTTATGTCGTTCATGTAGGCCCTGACCCGCAATTAAGAATCTTCAAAATCGCCCAGAAGCTTGATATGATGACCAGCAATTACGTTTGGTTTGCGACTGATTGGCTTGCTGCTACTTTAGATTCCTTTTCGCCAACCAATAGTGCTTCACTTGATATCCTTCATGGGGTAGTTGGGCTACGCCCTCATACTCCAGATTCTGAAGGAAAAAGGGCTTTGGCCGATTCTGTGATGAATGTTTATGGACTCTATGCTTATGATTCGGTATGGGTTGTTGCCAGGGCAGTCGACAAGTTTCTCAAAGAAAATGGCAACATCACGTTTTCGTCCCAAGGTAAAGTATTTGGCTCCAGTGCAAGTGGAATTCAACTGGGAAAGCTTAAAGTTTTTGATGGCGGAAGTGATCTGCTTAGGATTATTATGGGAACAAATTTCACTGGTTTAAGTGGTCGAATTCAGTTTGATGCAGACAGAAATATTATCAATGGTAGCTATGATGTCATTAATATTGACTCAAAGGGATTTCATACAGTAGGTTATTGGTCTAATTACTCGGGGCTATTGGTTTCACCTCCAGAAGATTTGACATTGAAGCAAGAGGATTATTCTCGCTTAAATCAGAAAATTGAGAGTGTGGTTTGGCCTGGTGGAAAGACAGAAACACCACGCGGTTGGGTGATTGCGGATGCTGGAAGACCCCTCAGAATCGCGTTCCCAAAAAGAGAAAGCTTTGTTGATTTTGTTACTCAATTGAACAACAGCAATGTAGTTCGAGGATACACTATTGATGTTTTCAAAGAAGCCCTCAAGTTTATTCCATATGATGTCCCTTACGAATTTGTGCCTTTCGGGGATGGTCGAGCCAATCCCAATTATGATGAACTTGTTCAGTCGGTTGCCGATCATGTGTTTGATGCAGCTGTCGGGGACATTGCTATTGTTACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACTACTGGGCTAATCATAGTTGCCCCAGTTGAAGATTCAAAATCAAGTGCTTGGGTTTTTCTTAGACCATTTACAGTGGAGATGTGGTGTGTAACTGCAGCTTCTTTTGTGATTATTGGGATTGTTATTTGGATTCTCGAGCACCGAATCAACGACCATTTTCGCGGTCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCTTTTCAACTCTGTTCAAGGCAAATCAAGAAGCAACAATTAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTCTTCCTATTGTTGGTAATAACGTCAAGCTACACGGCAAGTTTGACATCAATCCTAACCATTCAGCAACTTCCTTCGTCGATAACTGGAATTGATGACTTGATTGCAAGTAACTTGCCAATAGGATATCAGGTAGGTTCTTTCGCTTACAGCTATCTGACAGACAGCCTTTTCATACCACGTTCCAGACTCGTGATGCTCTACACCCCAGAGGATTACGAGAGAGCGCTCCGGGTCGGGCCAAAAGGAGGCGGTGTAGCAGCGATCATCGATGAACTTCCATATGTGGAGCTGTTTCTGTCGAATACAAAAGAATTTGGAATGATCGGGCAACCTTTTACCAGGAGCGGATGGGGATTTGCTTTTCAGCGAGAATCTCGACTTGCAGTTGATATGTCGACGGCAATTTTGAGGCTTTCTGAGAGTGGAAAGCTTCAAGAGCTACATGACTCCTGGTTCTGTAAGCTCGGTTGTCCTGGTGAGCGGAGAGGAAAATCAGAGCCAGACCAACTTCACTTGATCAGCTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCTGTTGCCGCACTTTTCGTGTTTCTTCTATTATTAGTTCGCCAGTATATCCGCTACAAACGACATCGTCGTCATTTTGAGGAAACTACGCCATCTCCCATTACATCACACACTAGCTGTACTCGGTCCATTCAAAGCTTTATAAGCTTTATTGACGAGAAGGAAGAAGCCATCAAGAACTTGTTTCGAGGGTCACATGGTGGTACTCAAAATGGAGACAACCTCCAGAAACATTCTCGAGAGGCTGTGAATAAGATTGATCCAGAGGTACAGATGGGGACCTCGAGTATGAATCAAAGATGA | 2781 | 43.91 | MRKFAALALRTLVWLLLTGPIWCQKPAVNIGAVFTFNSVIGRAAKPAMEAAISHINADPKILDGTQLKLLMEDANCSGFLGTVGALQVLEKEVVAIIGPQSSVVAHVISQIVNGLQVPQVSYGATDPSLSSLQLPFFLRTALSDSYQMAAVADLIVYYGWKEVIAIYLDDDYGRNGISSLGDELQKKMCRISHQFALPSLANLSQITEALNNSKLLGPRVYVVHVGPDPQLRIFKIAQKLDMMTSNYVWFATDWLAATLDSFSPTNSASLDILHGVVGLRPHTPDSEGKRALADSVMNVYGLYAYDSVWVVARAVDKFLKENGNITFSSQGKVFGSSASGIQLGKLKVFDGGSDLLRIIMGTNFTGLSGRIQFDADRNIINGSYDVINIDSKGFHTVGYWSNYSGLLVSPPEDLTLKQEDYSRLNQKIESVVWPGGKTETPRGWVIADAGRPLRIAFPKRESFVDFVTQLNNSNVVRGYTIDVFKEALKFIPYDVPYEFVPFGDGRANPNYDELVQSVADHVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVEDSKSSAWVFLRPFTVEMWCVTAASFVIIGIVIWILEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLPSSITGIDDLIASNLPIGYQVGSFAYSYLTDSLFIPRSRLVMLYTPEDYERALRVGPKGGGVAAIIDELPYVELFLSNTKEFGMIGQPFTRSGWGFAFQRESRLAVDMSTAILRLSESGKLQELHDSWFCKLGCPGERRGKSEPDQLHLISFWGLYLLCGIISVAALFVFLLLLVRQYIRYKRHRRHFEETTPSPITSHTSCTRSIQSFISFIDEKEEAIKNLFRGSHGGTQNGDNLQKHSREAVNKIDPEVQMGTSSMNQR | 926 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1521252 | 1526357 | - | MC04g0196 | Mch4g0236 | 684948 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0236 | 926 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 465 | 572 | IPR001638 | - | |
Mch4g0236 | 926 | Gene3D | - | 47 | 381 | - | - | |
Mch4g0236 | 926 | SMART | GluR_14 | 452 | 795 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Mch4g0236 | 926 | Pfam | Ligand-gated ion channel | 794 | 825 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Mch4g0236 | 926 | CDD | PBP1_GABAb_receptor_plant | 29 | 410 | IPR044440 | - | |
Mch4g0236 | 926 | Gene3D | - | 564 | 695 | - | - | |
Mch4g0236 | 926 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 28 | 865 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Mch4g0236 | 926 | PIRSF | IGluLR_plant | 2 | 923 | IPR017103 | - | |
Mch4g0236 | 926 | FunFam | Glutamate receptor | 690 | 797 | - | - | |
Mch4g0236 | 926 | Gene3D | - | 450 | 563 | - | - | |
Mch4g0236 | 926 | FunFam | Glutamate receptor | 564 | 694 | - | - | |
Mch4g0236 | 926 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 304 | 316 | - | - | |
Mch4g0236 | 926 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 101 | 129 | - | - | |
Mch4g0236 | 926 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 41 | 57 | - | - | |
Mch4g0236 | 926 | Gene3D | - | 143 | 406 | - | - | |
Mch4g0236 | 926 | Gene3D | - | 741 | 800 | - | - | |
Mch4g0236 | 926 | FunFam | Glutamate receptor | 448 | 564 | - | - | |
Mch4g0236 | 926 | SUPERFAMILY | Periplasmic binding protein-like II | 431 | 793 | - | - | |
Mch4g0236 | 926 | CDD | GluR_Plant | 451 | 793 | - | - | |
Mch4g0236 | 926 | MobiDBLite | consensus disorder prediction | 889 | 926 | - | - | |
Mch4g0236 | 926 | SUPERFAMILY | Periplasmic binding protein-like I | 23 | 444 | IPR028082 | - | |
Mch4g0236 | 926 | FunFam | Glutamate receptor | 143 | 322 | - | - | |
Mch4g0236 | 926 | Pfam | Receptor family ligand binding region | 44 | 390 | IPR001828 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0637 | Mch-Chr2:4357150 | Mch4g0236 | Mch-Chr4:1521252 | 0 | dispersed | |
Mch4g0236 | Mch-Chr4:1521252 | Mch4g0391 | Mch-Chr4:2484916 | 3.35E-261 | dispersed | |
Mch2g0636 | Mch-Chr2:4344135 | Mch4g0236 | Mch-Chr4:1521252 | 2.44E-307 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0236 | K05387 | - | csv:101203158 | 1398.26 |