Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0236 ATGAGAAAGTTTGCAGCTCTAGCGCTGCGGACTTTGGTATGGCTGCTTCTCACTGGTCCGATCTGGTGCCAAAAGCCTGCCGTAAATATTGGTGCGGTTTTTACTTTCAATTCCGTTATTGGTAGAGCTGCAAAGCCAGCCATGGAAGCAGCAATCTCCCACATAAACGCGGACCCCAAAATTTTGGATGGGACACAGCTGAAGTTGCTGATGGAGGACGCTAATTGCAGTGGCTTCTTGGGCACCGTTGGAGCTTTGCAGGTACTGGAGAAAGAGGTTGTGGCCATCATTGGCCCACAGTCCTCTGTGGTGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAAGTATCATATGGTGCCACTGATCCATCATTATCAAGTCTTCAACTCCCCTTTTTCCTTCGAACTGCTTTAAGTGACTCGTACCAAATGGCTGCCGTGGCTGACTTGATTGTTTATTATGGGTGGAAAGAGGTCATCGCTATATATTTGGATGATGATTATGGGAGAAATGGAATATCTTCCTTAGGTGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATCAATTTGCCTTGCCTTCTCTGGCTAATCTAAGTCAGATCACGGAGGCACTTAATAATTCTAAATTGCTTGGTCCACGCGTTTATGTCGTTCATGTAGGCCCTGACCCGCAATTAAGAATCTTCAAAATCGCCCAGAAGCTTGATATGATGACCAGCAATTACGTTTGGTTTGCGACTGATTGGCTTGCTGCTACTTTAGATTCCTTTTCGCCAACCAATAGTGCTTCACTTGATATCCTTCATGGGGTAGTTGGGCTACGCCCTCATACTCCAGATTCTGAAGGAAAAAGGGCTTTGGCCGATTCTGTGATGAATGTTTATGGACTCTATGCTTATGATTCGGTATGGGTTGTTGCCAGGGCAGTCGACAAGTTTCTCAAAGAAAATGGCAACATCACGTTTTCGTCCCAAGGTAAAGTATTTGGCTCCAGTGCAAGTGGAATTCAACTGGGAAAGCTTAAAGTTTTTGATGGCGGAAGTGATCTGCTTAGGATTATTATGGGAACAAATTTCACTGGTTTAAGTGGTCGAATTCAGTTTGATGCAGACAGAAATATTATCAATGGTAGCTATGATGTCATTAATATTGACTCAAAGGGATTTCATACAGTAGGTTATTGGTCTAATTACTCGGGGCTATTGGTTTCACCTCCAGAAGATTTGACATTGAAGCAAGAGGATTATTCTCGCTTAAATCAGAAAATTGAGAGTGTGGTTTGGCCTGGTGGAAAGACAGAAACACCACGCGGTTGGGTGATTGCGGATGCTGGAAGACCCCTCAGAATCGCGTTCCCAAAAAGAGAAAGCTTTGTTGATTTTGTTACTCAATTGAACAACAGCAATGTAGTTCGAGGATACACTATTGATGTTTTCAAAGAAGCCCTCAAGTTTATTCCATATGATGTCCCTTACGAATTTGTGCCTTTCGGGGATGGTCGAGCCAATCCCAATTATGATGAACTTGTTCAGTCGGTTGCCGATCATGTGTTTGATGCAGCTGTCGGGGACATTGCTATTGTTACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACTACTGGGCTAATCATAGTTGCCCCAGTTGAAGATTCAAAATCAAGTGCTTGGGTTTTTCTTAGACCATTTACAGTGGAGATGTGGTGTGTAACTGCAGCTTCTTTTGTGATTATTGGGATTGTTATTTGGATTCTCGAGCACCGAATCAACGACCATTTTCGCGGTCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCTTTTCAACTCTGTTCAAGGCAAATCAAGAAGCAACAATTAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTCTTCCTATTGTTGGTAATAACGTCAAGCTACACGGCAAGTTTGACATCAATCCTAACCATTCAGCAACTTCCTTCGTCGATAACTGGAATTGATGACTTGATTGCAAGTAACTTGCCAATAGGATATCAGGTAGGTTCTTTCGCTTACAGCTATCTGACAGACAGCCTTTTCATACCACGTTCCAGACTCGTGATGCTCTACACCCCAGAGGATTACGAGAGAGCGCTCCGGGTCGGGCCAAAAGGAGGCGGTGTAGCAGCGATCATCGATGAACTTCCATATGTGGAGCTGTTTCTGTCGAATACAAAAGAATTTGGAATGATCGGGCAACCTTTTACCAGGAGCGGATGGGGATTTGCTTTTCAGCGAGAATCTCGACTTGCAGTTGATATGTCGACGGCAATTTTGAGGCTTTCTGAGAGTGGAAAGCTTCAAGAGCTACATGACTCCTGGTTCTGTAAGCTCGGTTGTCCTGGTGAGCGGAGAGGAAAATCAGAGCCAGACCAACTTCACTTGATCAGCTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCTGTTGCCGCACTTTTCGTGTTTCTTCTATTATTAGTTCGCCAGTATATCCGCTACAAACGACATCGTCGTCATTTTGAGGAAACTACGCCATCTCCCATTACATCACACACTAGCTGTACTCGGTCCATTCAAAGCTTTATAAGCTTTATTGACGAGAAGGAAGAAGCCATCAAGAACTTGTTTCGAGGGTCACATGGTGGTACTCAAAATGGAGACAACCTCCAGAAACATTCTCGAGAGGCTGTGAATAAGATTGATCCAGAGGTACAGATGGGGACCTCGAGTATGAATCAAAGATGA 2781 43.91 MRKFAALALRTLVWLLLTGPIWCQKPAVNIGAVFTFNSVIGRAAKPAMEAAISHINADPKILDGTQLKLLMEDANCSGFLGTVGALQVLEKEVVAIIGPQSSVVAHVISQIVNGLQVPQVSYGATDPSLSSLQLPFFLRTALSDSYQMAAVADLIVYYGWKEVIAIYLDDDYGRNGISSLGDELQKKMCRISHQFALPSLANLSQITEALNNSKLLGPRVYVVHVGPDPQLRIFKIAQKLDMMTSNYVWFATDWLAATLDSFSPTNSASLDILHGVVGLRPHTPDSEGKRALADSVMNVYGLYAYDSVWVVARAVDKFLKENGNITFSSQGKVFGSSASGIQLGKLKVFDGGSDLLRIIMGTNFTGLSGRIQFDADRNIINGSYDVINIDSKGFHTVGYWSNYSGLLVSPPEDLTLKQEDYSRLNQKIESVVWPGGKTETPRGWVIADAGRPLRIAFPKRESFVDFVTQLNNSNVVRGYTIDVFKEALKFIPYDVPYEFVPFGDGRANPNYDELVQSVADHVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVEDSKSSAWVFLRPFTVEMWCVTAASFVIIGIVIWILEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLPSSITGIDDLIASNLPIGYQVGSFAYSYLTDSLFIPRSRLVMLYTPEDYERALRVGPKGGGVAAIIDELPYVELFLSNTKEFGMIGQPFTRSGWGFAFQRESRLAVDMSTAILRLSESGKLQELHDSWFCKLGCPGERRGKSEPDQLHLISFWGLYLLCGIISVAALFVFLLLLVRQYIRYKRHRRHFEETTPSPITSHTSCTRSIQSFISFIDEKEEAIKNLFRGSHGGTQNGDNLQKHSREAVNKIDPEVQMGTSSMNQR 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1521252 1526357 - MC04g0196 Mch4g0236 684948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0236 926 Pfam Bacterial extracellular solute-binding proteins, family 3 465 572 IPR001638 -
Mch4g0236 926 Gene3D - 47 381 - -
Mch4g0236 926 SMART GluR_14 452 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch4g0236 926 Pfam Ligand-gated ion channel 794 825 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch4g0236 926 CDD PBP1_GABAb_receptor_plant 29 410 IPR044440 -
Mch4g0236 926 Gene3D - 564 695 - -
Mch4g0236 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 865 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch4g0236 926 PIRSF IGluLR_plant 2 923 IPR017103 -
Mch4g0236 926 FunFam Glutamate receptor 690 797 - -
Mch4g0236 926 Gene3D - 450 563 - -
Mch4g0236 926 FunFam Glutamate receptor 564 694 - -
Mch4g0236 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 304 316 - -
Mch4g0236 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 101 129 - -
Mch4g0236 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 41 57 - -
Mch4g0236 926 Gene3D - 143 406 - -
Mch4g0236 926 Gene3D - 741 800 - -
Mch4g0236 926 FunFam Glutamate receptor 448 564 - -
Mch4g0236 926 SUPERFAMILY Periplasmic binding protein-like II 431 793 - -
Mch4g0236 926 CDD GluR_Plant 451 793 - -
Mch4g0236 926 MobiDBLite consensus disorder prediction 889 926 - -
Mch4g0236 926 SUPERFAMILY Periplasmic binding protein-like I 23 444 IPR028082 -
Mch4g0236 926 FunFam Glutamate receptor 143 322 - -
Mch4g0236 926 Pfam Receptor family ligand binding region 44 390 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0637 Mch-Chr2:4357150 Mch4g0236 Mch-Chr4:1521252 0 dispersed
Mch4g0236 Mch-Chr4:1521252 Mch4g0391 Mch-Chr4:2484916 3.35E-261 dispersed
Mch2g0636 Mch-Chr2:4344135 Mch4g0236 Mch-Chr4:1521252 2.44E-307 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0236 K05387 - csv:101203158 1398.26