Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0252 ATGGACACCGCTCCTCCTCCCCCCACCCTCCAATTTCCGGTCAACCTCAACTCCTCCCCTCCTCCGCCGCCGCCGCCCGTCAACTTCTTCGCCGCCGACGACAAAACCCGCGTCGCCAAGGTCCCCACCTCCGACAATAATCTCACTCCCTCCAACCTCGCCCACTTCAACATTAACACGGGGTTGAATCTTTTGACCACGAATTCCAGTAGCGATCAATCCATGGTGGACGATGGAGCCTCACCAAACCCAGAAGATAAAAGATCCAAAAACGAGCGAGTAGTTCTTCAAGCGGAACTGGAGAGAATAAACACAGAGAACCAACGATTAAAAGAGATGTTAAATCAAGTGACCAGCAATTACCACGCCTTACAGATGCACTTCACCACGTTAATTCAAACCCAGAAGTCCGACGCCGGCGACCAATTAATCGACGAAAAGGGCGGTGGAGGCGGTGGCAGTGGTGGAGGAGGAGGGAAGTTGGTGCCGAGGCAATTCATGGATCTTGGATTGGCTACTAACACGGAGACGGATGAGCCATCGATGTCGTCCTCGGATGGCGATCGGCGGTCACGGTCACCGGGAAACACGGGAGAAGTGGCGTCATCGTCGTCGAAACGGCATAGCCCGGATCAGGGATCAAACTGGGGATCCAATAATAATAATAATAAGGTTCCGAAATTCAGTTCTTCTTCTTCTCCGGGTAAAGACGTGGACCAGACTGAGGCTACCATGAGAAAGGCCAGAGTCTCAGTTCGAGCCCGATCCGAAGCTCCCATGATCACAGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCAAAAGGAAACCCATGTCCTCGAGCTTACTACCGTTGCACCATGGCCGCTGGCTGCCCAGTTCGGAAACAAGTTCAGAGGTGCGCAGAAGACAAAACAATCCTAATAACAACCTACGAAGGCAATCACAACCACCCTCTACCGCCGGCTGCCATGGCCATGGCCTCGACAACATCCTCGGCAGCGAGAATGCTGCTGTCGGGATCGATGTCGAGCGCCGAAGGCTTAATGAACTCGAATTTTCTGGCGAGAACTCTGCTGCCGTGCTCCTCGAGCATGGCCACCATCTCCGCCTCCGCCCCGTTCCCCACCGTCACCTTAGACCTCACGCAATCGCCGAATTCTTTACCCTTCCAGCGGCCACCGGCCGGCCAGTTCCAGATTCCGTTCCTCACCCCAACTCACAATTTGATGCCACAGATCTTTGGACAGCCCTTGTACCACAACCAGTCCAAATTCTCCGGCCTCCAAATGTCCAAGGAGATAGAGGGATCTCAGGTGGCGCAGCCACCGCAGAATCCATTCGCCGAGACGTTGAGTGCAGCGGGCGCTGCGATTGCGGCCGACCCGAATTTTATTGCCGCTTTGGCAACGGCGATGACGTCGATAATTGGGGGGTCTCACCATCAACATCAGAAGGAGACGAGTAATGGCACTTCGAATAATAGTAATAACGTTGATAATAATGCAACTAGCAACTCTCACTCGTAA 1533 53.42 MDTAPPPPTLQFPVNLNSSPPPPPPPVNFFAADDKTRVAKVPTSDNNLTPSNLAHFNINTGLNLLTTNSSSDQSMVDDGASPNPEDKRSKNERVVLQAELERINTENQRLKEMLNQVTSNYHALQMHFTTLIQTQKSDAGDQLIDEKGGGGGGSGGGGGKLVPRQFMDLGLATNTETDEPSMSSSDGDRRSRSPGNTGEVASSSSKRHSPDQGSNWGSNNNNNKVPKFSSSSSPGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSAEGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQSPNSLPFQRPPAGQFQIPFLTPTHNLMPQIFGQPLYHNQSKFSGLQMSKEIEGSQVAQPPQNPFAETLSAAGAAIAADPNFIAALATAMTSIIGGSHHQHQKETSNGTSNNSNNVDNNATSNSHS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1653792 1657247 - MC04g0209 Mch4g0252 684964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0252 510 MobiDBLite consensus disorder prediction 480 510 - -
Mch4g0252 510 Coils Coil 93 120 - -
Mch4g0252 510 MobiDBLite consensus disorder prediction 170 239 - -
Mch4g0252 510 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 76 485 IPR044810 GO:0003700(InterPro)
Mch4g0252 510 MobiDBLite consensus disorder prediction 67 91 - -
Mch4g0252 510 Pfam WRKY DNA -binding domain 263 320 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0252 510 SMART WRKY_cls 261 321 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0252 510 MobiDBLite consensus disorder prediction 141 255 - -
Mch4g0252 510 MobiDBLite consensus disorder prediction 1 27 - -
Mch4g0252 510 SUPERFAMILY WRKY DNA-binding domain 254 322 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0252 510 Gene3D WRKY domain 246 323 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0252 510 FunFam probable WRKY transcription factor 31 246 323 - -
Mch4g0252 510 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1525 Mch-Chr3:17354615 Mch4g0252 Mch-Chr4:1653792 1.02E-34 dispersed
Mch4g0252 Mch-Chr4:1653792 Mch6g0215 Mch-Chr6:1447524 1.87E-47 dispersed
Mch1g1738 Mch-Chr1:17926845 Mch4g0252 Mch-Chr4:1653792 1.47E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43132 PF03106 WRKY 2.30E-24 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0252 - - - 0.0