Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0267 | ATGGAGCGTGGAGGATCCAGTGGAAGCAGTGGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACAACAACAGCAGCAGCAGTGGGATTTCTTCTATGGTGATGATGAGTAGTAGTAGTAATAATAATTCCCAAATATTGGACAACAACAACAACAACGTTAATAATAAGCTGTTTGTGCCTTTATCTTGGTCTGCTACTTCCACTGCACAAAGGGTTTCTGCCTTTGTCCCTCAGCCTCCTCATAATAATTCAAATCATAATCTTCAAAACAGCTGCAGAGCTAAGATCATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTGGAGCAGGCGTGCGCGGTGGCCGGAGGGAGCTGCAGGGCGACGGCGCGTGGGGATGATCCAGCACTGGATCAGTTCATGGAGGCGTACTGTGAGATGTTGAGCAAGTACGAGCAAGAGTTGAGCAAGCCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTTCTTCTTCTACTTCTGATGGTTGCGAGCTGGTCGGGCAAAGCGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAGAACTACATTGACCCGCAGGCTGAAGAGAAGGAATTGAAGGGCCAGCTTCTACGCAAATACAGCGGATACCTCGGCAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGAAAGTTGCCGAAAGAAGCCCGGCAGGAGCTGCTCGACTGGTGGAGCAGGCACTACAAGTGGCCATACCCCTCGGAGGCACAAAAGGTGGCGTTGGCGGAGTCCACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCAGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATAATCCCTTCTCTATGGACTGCTCCTCTACTCTCTTCTGA | 1041 | 50.62 | MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLFVPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1731981 | 1735467 | - | MC04g0223 | Mch4g0267 | 684979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0267 | 346 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Mch4g0267 | 346 | SMART | KNOX2_2 | 139 | 190 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch4g0267 | 346 | FunFam | Homeobox protein knotted-1-like 2 | 252 | 314 | - | - | |
Mch4g0267 | 346 | Pfam | KNOX1 domain | 95 | 132 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch4g0267 | 346 | SUPERFAMILY | Homeodomain-like | 249 | 324 | IPR009057 | - | |
Mch4g0267 | 346 | ProSiteProfiles | ELK domain profile. | 227 | 247 | IPR005539 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | ProSiteProfiles | 'Homeobox' domain profile. | 247 | 310 | IPR001356 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | Gene3D | - | 252 | 314 | - | - | |
Mch4g0267 | 346 | SMART | KNOX1_2 | 92 | 136 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch4g0267 | 346 | SMART | ELK_2 | 227 | 248 | IPR005539 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | SMART | HOX_1 | 249 | 314 | IPR001356 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | Pfam | ELK domain | 227 | 248 | IPR005539 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | ProSitePatterns | 'Homeobox' domain signature. | 285 | 308 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Mch4g0267 | 346 | CDD | homeodomain | 259 | 311 | IPR001356 | GO:0003677(InterPro) | |
Mch4g0267 | 346 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 95 | 317 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch4g0267 | 346 | Pfam | KNOX2 domain | 144 | 188 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch4g0267 | 346 | Pfam | Homeobox KN domain | 267 | 306 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0526 | Mch-Chr11:3387090 | Mch4g0267 | Mch-Chr4:1731981 | 1.68E-32 | dispersed | |
Mch4g0267 | Mch-Chr4:1731981 | Mch9g2260 | Mch-Chr9:22932845 | 3.00E-75 | dispersed | |
Mch1g1729 | Mch-Chr1:17858038 | Mch4g0267 | Mch-Chr4:1731981 | 4.02E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43135 | PF03791 | KNOX2 | 6.30E-22 | No_clan | Mch | TF |
Pathway information
