Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0267 ATGGAGCGTGGAGGATCCAGTGGAAGCAGTGGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACAACAACAGCAGCAGCAGTGGGATTTCTTCTATGGTGATGATGAGTAGTAGTAGTAATAATAATTCCCAAATATTGGACAACAACAACAACAACGTTAATAATAAGCTGTTTGTGCCTTTATCTTGGTCTGCTACTTCCACTGCACAAAGGGTTTCTGCCTTTGTCCCTCAGCCTCCTCATAATAATTCAAATCATAATCTTCAAAACAGCTGCAGAGCTAAGATCATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTGGAGCAGGCGTGCGCGGTGGCCGGAGGGAGCTGCAGGGCGACGGCGCGTGGGGATGATCCAGCACTGGATCAGTTCATGGAGGCGTACTGTGAGATGTTGAGCAAGTACGAGCAAGAGTTGAGCAAGCCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTTCTTCTTCTACTTCTGATGGTTGCGAGCTGGTCGGGCAAAGCGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAGAACTACATTGACCCGCAGGCTGAAGAGAAGGAATTGAAGGGCCAGCTTCTACGCAAATACAGCGGATACCTCGGCAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGAAAGTTGCCGAAAGAAGCCCGGCAGGAGCTGCTCGACTGGTGGAGCAGGCACTACAAGTGGCCATACCCCTCGGAGGCACAAAAGGTGGCGTTGGCGGAGTCCACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCAGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATAATCCCTTCTCTATGGACTGCTCCTCTACTCTCTTCTGA 1041 50.62 MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLFVPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1731981 1735467 - MC04g0223 Mch4g0267 684979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0267 346 MobiDBLite consensus disorder prediction 1 21 - -
Mch4g0267 346 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch4g0267 346 FunFam Homeobox protein knotted-1-like 2 252 314 - -
Mch4g0267 346 Pfam KNOX1 domain 95 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch4g0267 346 SUPERFAMILY Homeodomain-like 249 324 IPR009057 -
Mch4g0267 346 ProSiteProfiles ELK domain profile. 227 247 IPR005539 GO:0003677(InterPro)
Mch4g0267 346 ProSiteProfiles 'Homeobox' domain profile. 247 310 IPR001356 GO:0003677(InterPro)
Mch4g0267 346 Gene3D - 252 314 - -
Mch4g0267 346 SMART KNOX1_2 92 136 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch4g0267 346 SMART ELK_2 227 248 IPR005539 GO:0003677(InterPro)
Mch4g0267 346 SMART HOX_1 249 314 IPR001356 GO:0003677(InterPro)
Mch4g0267 346 Pfam ELK domain 227 248 IPR005539 GO:0003677(InterPro)
Mch4g0267 346 ProSitePatterns 'Homeobox' domain signature. 285 308 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch4g0267 346 CDD homeodomain 259 311 IPR001356 GO:0003677(InterPro)
Mch4g0267 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 317 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch4g0267 346 Pfam KNOX2 domain 144 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch4g0267 346 Pfam Homeobox KN domain 267 306 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0526 Mch-Chr11:3387090 Mch4g0267 Mch-Chr4:1731981 1.68E-32 dispersed
Mch4g0267 Mch-Chr4:1731981 Mch9g2260 Mch-Chr9:22932845 3.00E-75 dispersed
Mch1g1729 Mch-Chr1:17858038 Mch4g0267 Mch-Chr4:1731981 4.02E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43135 PF03791 KNOX2 6.30E-22 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0267 - - - 0.0