Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0268 ATGGCACAGTTGCCGCCCAAGATCCCGAACATGGCGCCTAATTGGCCGGAATTCTCTCGTCAGAAAATACCATCCATGGATAACTTTGCACCGGCGGCGGCGGCGACGGCGGGTCACCAGAATCCTTCTTGGGTCGACGAATTTCTCGATTTCTCCTCCGCCAGGCGCGGGTCCCACCGGAGGTCCGTTAGCGATTCTATCACATTCCTCGAAATGCCAATGCTGGAGGAAGAATGCCGCGGCGGCTCCGGCGGCGCTGCGGCGCCAGGATCCGGGTCCGGGGCGCGGAATGAGTTTGATAGATTCGACGACGAGCAATTCATGTCGATGTTTAACGATGAAATCTCCGCCGCCGTGGCGCCGACCGTGTCGTCGTCGAACCCCTCCACGCCGTCCGATCACAACAGCATTAACGACGAGAAAGACGGCCGGAACGACGGCAAGCAGAATCAGAGCAAAAACGAATCCGACGAAGCGCAGAGCCAACAGCAGTCGGAAACTCAAACGCAATCCAATTCTGCGGCGGCGGCTTCTAGCAACCGGATAACGGATCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCTCAAAGATCACGAGTCAGAAAGCTTCAATACATATCAGAACTCGAACGAAGCGTCACATCATTACAGGCTGAAGTTTCGGTGCTGTCGCCGCGGGTGGCGTTTTTGGACCATCAGAGGTTACTTCTGAACGTGGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTCGCACAGGACAAGATTTTCAAGGATGCTCATCAAGAGGCACTAAAGAGAGAAATAGAGAGGCTGAGGCAAGTGTATCACCAACAGAACATGAAGAAGATGGAAAATGCAGCAGCAGCACCAGCGCCGCCGCCACCCACCACCGCCGCTGGCGCTGCCGACGCCAAGCTTCCTCCAGCTGGTGTAGATCAAACAGAGCAAGGTGTTCTAAACGTCGTCGTTTAG 984 55.18 MAQLPPKIPNMAPNWPEFSRQKIPSMDNFAPAAAATAGHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEECRGGSGGAAAPGSGSGARNEFDRFDDEQFMSMFNDEISAAVAPTVSSSNPSTPSDHNSINDEKDGRNDGKQNQSKNESDEAQSQQQSETQTQSNSAAAASSNRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNMKKMENAAAAPAPPPPTTAAGAADAKLPPAGVDQTEQGVLNVVV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1744494 1751496 - MC04g0224 Mch4g0268 684980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0268 327 MobiDBLite consensus disorder prediction 120 134 - -
Mch4g0268 327 CDD bZIP_plant_RF2 187 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 MobiDBLite consensus disorder prediction 120 188 - -
Mch4g0268 327 MobiDBLite consensus disorder prediction 135 153 - -
Mch4g0268 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 MobiDBLite consensus disorder prediction 79 98 - -
Mch4g0268 327 PANTHER BASIC LEUCINE ZIPPER 34 1 299 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Mch4g0268 327 MobiDBLite consensus disorder prediction 286 316 - -
Mch4g0268 327 Coils Coil 265 285 - -
Mch4g0268 327 Pfam Basic region leucine zipper 183 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 SUPERFAMILY Leucine zipper domain 186 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 236 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 MobiDBLite consensus disorder prediction 1 22 - -
Mch4g0268 327 SMART brlzneu 182 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0268 327 MobiDBLite consensus disorder prediction 154 180 - -
Mch4g0268 327 Gene3D - 185 258 - -
Mch4g0268 327 FunFam Basic leucine zipper 61 185 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0268 Mch-Chr4:1744494 Mch4g0544 Mch-Chr4:3432065 1.31E-10 dispersed
Mch11g1032 Mch-Chr11:7189870 Mch4g0268 Mch-Chr4:1744494 6.11E-66 transposed
Mch3g0078 Mch-Chr3:908506 Mch4g0268 Mch-Chr4:1744494 3.38E-10 transposed
Mch2g0519 Mch-Chr2:3681985 Mch4g0268 Mch-Chr4:1744494 1.95E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43136 PF07716 bZIP_2 4.10E-09 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0268 - - - 0.0