Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0283 ATGTCCAAAGAGCAAGCAATTTCAAATGCATTCGTCTGCAATAATATCCCAACACTTGGATCCATCAATAATCCTCCTGTTATCAAGAAGAAGAGGAACCTCCCTGGAAACCCAGATCCCGAAGCGGAAGTTGTGGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGAAATATGCGGTAAGGGTTTCCAAAGGGATCAAAACCTACAGCTGCACAGGCGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAACAACAAAGAGGGTGTAAGGAAGCGAGTTTATGTTTGTCCAGAGAAGGGCTGCGTCCACCACCACCCGTCGAGGGCCCTCGGCGACCTCACCGGAATCAAAAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATATGCTGTGCAGTCGGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCCTACTGTGTGGCACTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCATCAACCAACAATAACAGTACAATAGCTGAAAACAACTACCATTTCCTAAAGCCTCCCCACCAAATCTTCTCCTCCTCCAACATTTTCAGGCTCAACAACTCTACTGATGAATCTCGTGATCACCACATGGTCTTCAATAATTACAATCTCAACACACCCACAATAGGCCTCCCCTTTTGGATGATGGCACCAGCTGCCAATAACAACAACTCCCACCAAATCAATGATCTCCATGATCATCATCACCCATTTTCAGCAGCAAGCTCTGTGATTAGTGCTCCTTCATTGTACAGCAATCAGGATCAGCAAGCCCATGAAGCTGTACTGGGAAATATGTCAGCCACAGTTTTGCTGCAGAAGGCTGCTCAAATTGGGGTGACAAGCTCCACAAACGACCCATCTTTGATGATGGGGAGCAGTTTTGGGGTGAAATTGGGTGATGGGAAGGGGTTTTTTTCAGGCTTTTATGGGACAAATTATAATTCAAATTCTATGCCAAGTTGTTCCAGCCTTGAAAATGGTGGAGGAGAAGATTCTGGTTGGAGTAATTTGGTGCAGATGTATCCTCCAGCAAAGAGAAGGCACACAGTGAGTGAAGAGAGTGTTGTTTCAGGAGGAGGAGAGATCACAAGGGATTTTTTGGGTGTGGGAGTGCACACCATATGCCATCCATCAGCAGTAAATGGATGGATCTGA 1293 46.33 MSKEQAISNAFVCNNIPTLGSINNPPVIKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSNNKEGVRKRVYVCPEKGCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASSTNNNSTIAENNYHFLKPPHQIFSSSNIFRLNNSTDESRDHHMVFNNYNLNTPTIGLPFWMMAPAANNNNSHQINDLHDHHHPFSAASSVISAPSLYSNQDQQAHEAVLGNMSATVLLQKAAQIGVTSSTNDPSLMMGSSFGVKLGDGKGFFSGFYGTNYNSNSMPSCSSLENGGGEDSGWSNLVQMYPPAKRRHTVSEESVVSGGGEITRDFLGVGVHTICHPSAVNGWI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1812106 1815326 + MC04g0233 Mch4g0283 684995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0283 430 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 203 - -
Mch4g0283 430 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Mch4g0283 430 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Mch4g0283 430 FunFam protein indeterminate-domain 12-like 37 108 - -
Mch4g0283 430 Gene3D Classic Zinc Finger 54 81 - -
Mch4g0283 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Mch4g0283 430 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Mch4g0283 430 SUPERFAMILY beta-beta-alpha zinc fingers 57 157 IPR036236 -
Mch4g0283 430 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Mch4g0283 430 Gene3D Classic Zinc Finger 95 185 - -
Mch4g0283 430 SMART c2h2final6 58 80 IPR013087 -
Mch4g0283 430 SMART c2h2final6 102 132 IPR013087 -
Mch4g0283 430 SMART c2h2final6 137 157 IPR013087 -
Mch4g0283 430 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Mch4g0283 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 417 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0283 Mch-Chr4:1812106 Mch9g0902 Mch-Chr9:7090729 2.87E-107 dispersed
Mch2g0509 Mch-Chr2:3633924 Mch4g0283 Mch-Chr4:1812106 1.09E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43137 PF00096 zf-C2H2 0.014 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0283 K25870 - csv:101207997 519.62