Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0283 | ATGTCCAAAGAGCAAGCAATTTCAAATGCATTCGTCTGCAATAATATCCCAACACTTGGATCCATCAATAATCCTCCTGTTATCAAGAAGAAGAGGAACCTCCCTGGAAACCCAGATCCCGAAGCGGAAGTTGTGGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGAAATATGCGGTAAGGGTTTCCAAAGGGATCAAAACCTACAGCTGCACAGGCGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAACAACAAAGAGGGTGTAAGGAAGCGAGTTTATGTTTGTCCAGAGAAGGGCTGCGTCCACCACCACCCGTCGAGGGCCCTCGGCGACCTCACCGGAATCAAAAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATATGCTGTGCAGTCGGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCCTACTGTGTGGCACTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCATCAACCAACAATAACAGTACAATAGCTGAAAACAACTACCATTTCCTAAAGCCTCCCCACCAAATCTTCTCCTCCTCCAACATTTTCAGGCTCAACAACTCTACTGATGAATCTCGTGATCACCACATGGTCTTCAATAATTACAATCTCAACACACCCACAATAGGCCTCCCCTTTTGGATGATGGCACCAGCTGCCAATAACAACAACTCCCACCAAATCAATGATCTCCATGATCATCATCACCCATTTTCAGCAGCAAGCTCTGTGATTAGTGCTCCTTCATTGTACAGCAATCAGGATCAGCAAGCCCATGAAGCTGTACTGGGAAATATGTCAGCCACAGTTTTGCTGCAGAAGGCTGCTCAAATTGGGGTGACAAGCTCCACAAACGACCCATCTTTGATGATGGGGAGCAGTTTTGGGGTGAAATTGGGTGATGGGAAGGGGTTTTTTTCAGGCTTTTATGGGACAAATTATAATTCAAATTCTATGCCAAGTTGTTCCAGCCTTGAAAATGGTGGAGGAGAAGATTCTGGTTGGAGTAATTTGGTGCAGATGTATCCTCCAGCAAAGAGAAGGCACACAGTGAGTGAAGAGAGTGTTGTTTCAGGAGGAGGAGAGATCACAAGGGATTTTTTGGGTGTGGGAGTGCACACCATATGCCATCCATCAGCAGTAAATGGATGGATCTGA | 1293 | 46.33 | MSKEQAISNAFVCNNIPTLGSINNPPVIKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSNNKEGVRKRVYVCPEKGCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASSTNNNSTIAENNYHFLKPPHQIFSSSNIFRLNNSTDESRDHHMVFNNYNLNTPTIGLPFWMMAPAANNNNSHQINDLHDHHHPFSAASSVISAPSLYSNQDQQAHEAVLGNMSATVLLQKAAQIGVTSSTNDPSLMMGSSFGVKLGDGKGFFSGFYGTNYNSNSMPSCSSLENGGGEDSGWSNLVQMYPPAKRRHTVSEESVVSGGGEITRDFLGVGVHTICHPSAVNGWI | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1812106 | 1815326 | + | MC04g0233 | Mch4g0283 | 684995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0283 | 430 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 163 | 203 | - | - | |
Mch4g0283 | 430 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - | |
Mch4g0283 | 430 | Pfam | Zinc finger, C2H2 type | 58 | 80 | IPR013087 | - | |
Mch4g0283 | 430 | FunFam | protein indeterminate-domain 12-like | 37 | 108 | - | - | |
Mch4g0283 | 430 | Gene3D | Classic Zinc Finger | 54 | 81 | - | - | |
Mch4g0283 | 430 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 80 | IPR013087 | - | |
Mch4g0283 | 430 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 136 | 160 | - | - | |
Mch4g0283 | 430 | SUPERFAMILY | beta-beta-alpha zinc fingers | 57 | 157 | IPR036236 | - | |
Mch4g0283 | 430 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Mch4g0283 | 430 | Gene3D | Classic Zinc Finger | 95 | 185 | - | - | |
Mch4g0283 | 430 | SMART | c2h2final6 | 58 | 80 | IPR013087 | - | |
Mch4g0283 | 430 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Mch4g0283 | 430 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Mch4g0283 | 430 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 115 | 194 | - | - | |
Mch4g0283 | 430 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 417 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g0283 | Mch-Chr4:1812106 | Mch9g0902 | Mch-Chr9:7090729 | 2.87E-107 | dispersed | |
Mch2g0509 | Mch-Chr2:3633924 | Mch4g0283 | Mch-Chr4:1812106 | 1.09E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43137 | PF00096 | zf-C2H2 | 0.014 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0283 | K25870 | - | csv:101207997 | 519.62 |