Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0317 ATGTCTTCAACGTCAACAAATAAGGCTGTGTGTTCTAAGAGCACCTGTGATCGGTCGAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTCGAAGGTTCGGAGAGATACTTCAATTACTCTGCATCGATTGATTTGAATGTCTCGAGTTCCACTAGCAATGTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTTGATGGGGAAAACTTGTCGGTCCTTGCGTACAGTGAAAATGCCCCCGAAATGTTGGATTTGGCCCCTCATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACAGATGTACGGACACTTTTTCGTTCCCCAGGTGCTGCTGCTTTACAGAAGGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAGAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAATAGATGCGGGATTAATTATAGACTTGGAACCAGTAAATCCAGCTGATGTGCCAGTAACTGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATTTCTAAATTGCAGTCCTTGCCAAGTGGGAATATATCTCTTTTATGCGAGGTATTGGTTAAGGAAGTTAGTGATTTGACAGGTTATGATCGGATAATGGTGTATAAATTCCACGAAGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGCCGACCTGACTTAGAACCATATCTCGGCTTACACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTCTGAAGAATAAAGTTAGGATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTAATGTCTATCACAATCAATGAGAATGATAATGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCCAGGTTTGTTCCATTTCCTTTGAGATATGCCTGTGAATTCTTGATTCAAGTATTTGGTATACAAATTAACAAAGAAGTGGAGCTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTGTGTGATATGCTGCTAAGAGATGCCCCGGTAGGAATTATAACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTGTATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCATCAGAGGCACAACTTAGAGATATAGCTGTATGGCTTCTGAAAGACCATAGTGGAAGCACCGGCTTAAGTACCGATAGCCTTATGGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAGGGACTTCCTTTTCTGGTTTCGGTCACATATGGCGAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGTGACCAAGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAACTGATATTACGAGGTTCTTTACAGGACGAGGACAGAATTGAAGAAGAATGCAACGTGATTGCAAATGTCCCATCAGTTGATGAGAGGACACAACGGTTGGATGAATTGCGTGTAATCACAAATGAGATGGTTCGCCTAATTGAGACCGCTGCAGTGCCCATTTTGGCTGTAGATGTCTTAGGCAAGATCAACGGTTGGAACTCGAAAGCTACTGAACTTACAGGACTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGACTGTCTCGTGGATGATTCTGTTAAGGTGGTAAAGAAAATGCTCTCCTTGGCCATTCGAGGTGATTTTACACCTGGGTATCACCTTTGTTCCATTGATGTAACCGTTATTTATGTTTGCATCATTGAAGAGAAAAATATAGAAATCAAACTCAAAACATATGGAACTCTGGGTCATAGTGGTCCAGTAATCTTAGTGGTTAATTCATGCTGTAGCCGAGACCTGAATGATAATGTTGTAGGAGTTTGCTTTATAGGCCAGGATGTTACTGAACAAAAACTGATTATGAACCGATACACCCAGATCCAAGGTGATTACACGGGGATTATGCGGAACCCATCTGCCCTTATTCCTCCAATTTTTATGACTGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGAGAAGAGGTGACAAATAGGATGCTTCTTGGGGAGGTTTTCACACTCGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTAACCAAGCTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATACAGATAAATTTTTGTTTAGGTTCTGTGACCGTGAAGGAAATTATGTTGAAACATTGCTTACAGCAAGCAAAAGGACCGATGCAGAGGGTAATATCACCGGGCTTTTCTTCTTCTTGCACGTGGCTAATCCAGAACTTCAATATGCTTTAGAAATGCAGCGGATATCAGAAGAAGCTACAGCTGATAACCTCTATAAATTAGCATATCTGCGTCAACAAATCCGAAAACCACTTGGTGGAATTATATTTATGCAGAAACTAATGGAGTCGTCTGACTTAAGTGAAGAGCAAAGGCGGCTACTTAAATTGAGCACTTTGAGTCGGGAACAGTTGCACAAGATCGTAGATGAAACTGATATTCAAAGTATTGAGGAAAGTTACATGGAAACAAACTGTAGCGAATTCAACCTCGGAGATGTTGTTGGCGTTGTAACGAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAGTCACCTGCTGATGTGTCATCTCTGCACTTATATGGAGATAACTTGAGGCTACAGCAGGTGCTTTCTGAGTTCTTGGCTAACACACTTCTCTTCACTTCCAAAGGATCATCCGTTGTCTTCAAAATAACCCCAATGAAGGAGCGTATCGGGAAGGGAATCCACATTGTTCATCTTAAATTTAGGATCACCCATCCTGCTCCAGGAATTCCCACGCACTTAATCCGAGAGATGTTTGATCACAACAATGATTGCTCGAAGGAAGCCCTTGGCCTATGCATCAGCCAGAAGCTCGTTAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATGGAATTCCCCTTGGCAGAGCATATTTCTTGA 3423 42.48 MSSTSTNKAVCSKSTCDRSKHGAHVVAQTPIDAKLHVDFEGSERYFNYSASIDLNVSSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRIDAGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRIMVYKFHEDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDNESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIITQSPNIMDLVKCDGAALYYRKKFWLLGVTPSEAQLRDIAVWLLKDHSGSTGLSTDSLMEAGFYGASALGDEVCGMAAVRITSRDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEDRIEEECNVIANVPSVDERTQRLDELRVITNEMVRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPLVDCLVDDSVKVVKKMLSLAIRGDFTPGYHLCSIDVTVIYVCIIEEKNIEIKLKTYGTLGHSGPVILVVNSCCSRDLNDNVVGVCFIGQDVTEQKLIMNRYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEVTNRMLLGEVFTLENFGCRVKDQTLTKLRILLHRVISGQDTDKFLFRFCDREGNYVETLLTASKRTDAEGNITGLFFFLHVANPELQYALEMQRISEEATADNLYKLAYLRQQIRKPLGGIIFMQKLMESSDLSEEQRRLLKLSTLSREQLHKIVDETDIQSIEESYMETNCSEFNLGDVVGVVTNQIMILSQEREVKIICESPADVSSLHLYGDNLRLQQVLSEFLANTLLFTSKGSSVVFKITPMKERIGKGIHIVHLKFRITHPAPGIPTHLIREMFDHNNDCSKEALGLCISQKLVKIMNGTVQYLREAETSSFIILMEFPLAEHIS 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2004598 2010252 + MC04g0258 Mch4g0317 685029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0317 1140 CDD PAS 626 684 IPR000014 -
Mch4g0317 1140 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 782 886 IPR035965 -
Mch4g0317 1140 Gene3D - 200 559 IPR029016 -
Mch4g0317 1140 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 750 770 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 730 747 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 SUPERFAMILY GAF domain-like 406 583 - -
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 685 IPR035965 -
Mch4g0317 1140 PIRSF Phytochrome_conventional 2 1140 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch4g0317 1140 SMART pas_2 617 683 IPR000014 -
Mch4g0317 1140 SMART pas_2 767 836 IPR000014 -
Mch4g0317 1140 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Mch4g0317 1140 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Mch4g0317 1140 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Mch4g0317 1140 NCBIfam PAS domain S-box protein 622 684 IPR000014 -
Mch4g0317 1140 NCBIfam PAS domain S-box protein 782 887 IPR000014 -
Mch4g0317 1140 Gene3D PAS domain 603 766 - -
Mch4g0317 1140 Pfam PAS fold 618 678 IPR013767 GO:0006355(InterPro)
Mch4g0317 1140 Pfam PAS fold 778 889 IPR013767 GO:0006355(InterPro)
Mch4g0317 1140 FunFam Phytochrome 403 534 - -
Mch4g0317 1140 Gene3D PAS domain 781 891 - -
Mch4g0317 1140 ProSiteProfiles Histidine kinase domain profile. 918 1137 IPR005467 -
Mch4g0317 1140 ProSiteProfiles PAS repeat profile. 768 820 IPR000014 -
Mch4g0317 1140 PANTHER OS08G0260000 PROTEIN 1 1013 - -
Mch4g0317 1140 Gene3D - 403 576 IPR043150 -
Mch4g0317 1140 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Mch4g0317 1140 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 980 1129 IPR036890 -
Mch4g0317 1140 CDD HATPase_Phy-like 1022 1133 IPR044767 -
Mch4g0317 1140 Gene3D PAS domain 74 322 - -
Mch4g0317 1140 FunFam Phytochrome 976 1135 - -
Mch4g0317 1140 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1023 1135 IPR003594 -
Mch4g0317 1140 Gene3D - 955 1129 IPR036890 -
Mch4g0317 1140 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Mch4g0317 1140 SUPERFAMILY GAF domain-like 199 395 - -
Mch4g0317 1140 SMART HKATPase_4 1023 1137 IPR003594 -
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Mch4g0317 1140 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 CDD PAS 779 889 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0317 Mch-Chr4:2004598 Mch8g1989 Mch-Chr8:22070940 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0317 - - - 0.0