Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0317 ATGTCTTCAACGTCAACAAATAAGGCTGTGTGTTCTAAGAGCACCTGTGATCGGTCGAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTCGAAGGTTCGGAGAGATACTTCAATTACTCTGCATCGATTGATTTGAATGTCTCGAGTTCCACTAGCAATGTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTTGATGGGGAAAACTTGTCGGTCCTTGCGTACAGTGAAAATGCCCCCGAAATGTTGGATTTGGCCCCTCATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACAGATGTACGGACACTTTTTCGTTCCCCAGGTGCTGCTGCTTTACAGAAGGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAGAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAATAGATGCGGGATTAATTATAGACTTGGAACCAGTAAATCCAGCTGATGTGCCAGTAACTGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATTTCTAAATTGCAGTCCTTGCCAAGTGGGAATATATCTCTTTTATGCGAGGTATTGGTTAAGGAAGTTAGTGATTTGACAGGTTATGATCGGATAATGGTGTATAAATTCCACGAAGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGCCGACCTGACTTAGAACCATATCTCGGCTTACACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTCTGAAGAATAAAGTTAGGATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTAATGTCTATCACAATCAATGAGAATGATAATGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCCAGGTTTGTTCCATTTCCTTTGAGATATGCCTGTGAATTCTTGATTCAAGTATTTGGTATACAAATTAACAAAGAAGTGGAGCTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTGTGTGATATGCTGCTAAGAGATGCCCCGGTAGGAATTATAACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTGTATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCATCAGAGGCACAACTTAGAGATATAGCTGTATGGCTTCTGAAAGACCATAGTGGAAGCACCGGCTTAAGTACCGATAGCCTTATGGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAGGGACTTCCTTTTCTGGTTTCGGTCACATATGGCGAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGTGACCAAGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAACTGATATTACGAGGTTCTTTACAGGACGAGGACAGAATTGAAGAAGAATGCAACGTGATTGCAAATGTCCCATCAGTTGATGAGAGGACACAACGGTTGGATGAATTGCGTGTAATCACAAATGAGATGGTTCGCCTAATTGAGACCGCTGCAGTGCCCATTTTGGCTGTAGATGTCTTAGGCAAGATCAACGGTTGGAACTCGAAAGCTACTGAACTTACAGGACTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGACTGTCTCGTGGATGATTCTGTTAAGGTGGTAAAGAAAATGCTCTCCTTGGCCATTCGAGGTGATTTTACACCTGGGTATCACCTTTGTTCCATTGATGTAACCGTTATTTATGTTTGCATCATTGAAGAGAAAAATATAGAAATCAAACTCAAAACATATGGAACTCTGGGTCATAGTGGTCCAGTAATCTTAGTGGTTAATTCATGCTGTAGCCGAGACCTGAATGATAATGTTGTAGGAGTTTGCTTTATAGGCCAGGATGTTACTGAACAAAAACTGATTATGAACCGATACACCCAGATCCAAGGTGATTACACGGGGATTATGCGGAACCCATCTGCCCTTATTCCTCCAATTTTTATGACTGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGAGAAGAGGTGACAAATAGGATGCTTCTTGGGGAGGTTTTCACACTCGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTAACCAAGCTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATACAGATAAATTTTTGTTTAGGTTCTGTGACCGTGAAGGAAATTATGTTGAAACATTGCTTACAGCAAGCAAAAGGACCGATGCAGAGGGTAATATCACCGGGCTTTTCTTCTTCTTGCACGTGGCTAATCCAGAACTTCAATATGCTTTAGAAATGCAGCGGATATCAGAAGAAGCTACAGCTGATAACCTCTATAAATTAGCATATCTGCGTCAACAAATCCGAAAACCACTTGGTGGAATTATATTTATGCAGAAACTAATGGAGTCGTCTGACTTAAGTGAAGAGCAAAGGCGGCTACTTAAATTGAGCACTTTGAGTCGGGAACAGTTGCACAAGATCGTAGATGAAACTGATATTCAAAGTATTGAGGAAAGTTACATGGAAACAAACTGTAGCGAATTCAACCTCGGAGATGTTGTTGGCGTTGTAACGAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAGTCACCTGCTGATGTGTCATCTCTGCACTTATATGGAGATAACTTGAGGCTACAGCAGGTGCTTTCTGAGTTCTTGGCTAACACACTTCTCTTCACTTCCAAAGGATCATCCGTTGTCTTCAAAATAACCCCAATGAAGGAGCGTATCGGGAAGGGAATCCACATTGTTCATCTTAAATTTAGGATCACCCATCCTGCTCCAGGAATTCCCACGCACTTAATCCGAGAGATGTTTGATCACAACAATGATTGCTCGAAGGAAGCCCTTGGCCTATGCATCAGCCAGAAGCTCGTTAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATGGAATTCCCCTTGGCAGAGCATATTTCTTGA 3423 42.48 MSSTSTNKAVCSKSTCDRSKHGAHVVAQTPIDAKLHVDFEGSERYFNYSASIDLNVSSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRIDAGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRIMVYKFHEDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDNESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIITQSPNIMDLVKCDGAALYYRKKFWLLGVTPSEAQLRDIAVWLLKDHSGSTGLSTDSLMEAGFYGASALGDEVCGMAAVRITSRDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEDRIEEECNVIANVPSVDERTQRLDELRVITNEMVRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPLVDCLVDDSVKVVKKMLSLAIRGDFTPGYHLCSIDVTVIYVCIIEEKNIEIKLKTYGTLGHSGPVILVVNSCCSRDLNDNVVGVCFIGQDVTEQKLIMNRYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEVTNRMLLGEVFTLENFGCRVKDQTLTKLRILLHRVISGQDTDKFLFRFCDREGNYVETLLTASKRTDAEGNITGLFFFLHVANPELQYALEMQRISEEATADNLYKLAYLRQQIRKPLGGIIFMQKLMESSDLSEEQRRLLKLSTLSREQLHKIVDETDIQSIEESYMETNCSEFNLGDVVGVVTNQIMILSQEREVKIICESPADVSSLHLYGDNLRLQQVLSEFLANTLLFTSKGSSVVFKITPMKERIGKGIHIVHLKFRITHPAPGIPTHLIREMFDHNNDCSKEALGLCISQKLVKIMNGTVQYLREAETSSFIILMEFPLAEHIS 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2004598 2010252 + MC04g0258 Mch4g0317 685029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0317 1140 CDD PAS 626 684 IPR000014 -
Mch4g0317 1140 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 782 886 IPR035965 -
Mch4g0317 1140 Gene3D - 200 559 IPR029016 -
Mch4g0317 1140 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 750 770 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 PRINTS Phytochrome signature 730 747 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 SUPERFAMILY GAF domain-like 406 583 - -
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 685 IPR035965 -
Mch4g0317 1140 PIRSF Phytochrome_conventional 2 1140 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch4g0317 1140 SMART pas_2 617 683 IPR000014 -
Mch4g0317 1140 SMART pas_2 767 836 IPR000014 -
Mch4g0317 1140 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Mch4g0317 1140 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Mch4g0317 1140 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Mch4g0317 1140 NCBIfam PAS domain S-box protein 622 684 IPR000014 -
Mch4g0317 1140 NCBIfam PAS domain S-box protein 782 887 IPR000014 -
Mch4g0317 1140 Gene3D PAS domain 603 766 - -
Mch4g0317 1140 Pfam PAS fold 618 678 IPR013767 GO:0006355(InterPro)
Mch4g0317 1140 Pfam PAS fold 778 889 IPR013767 GO:0006355(InterPro)
Mch4g0317 1140 FunFam Phytochrome 403 534 - -
Mch4g0317 1140 Gene3D PAS domain 781 891 - -
Mch4g0317 1140 ProSiteProfiles Histidine kinase domain profile. 918 1137 IPR005467 -
Mch4g0317 1140 ProSiteProfiles PAS repeat profile. 768 820 IPR000014 -
Mch4g0317 1140 PANTHER OS08G0260000 PROTEIN 1 1013 - -
Mch4g0317 1140 Gene3D - 403 576 IPR043150 -
Mch4g0317 1140 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Mch4g0317 1140 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 980 1129 IPR036890 -
Mch4g0317 1140 CDD HATPase_Phy-like 1022 1133 IPR044767 -
Mch4g0317 1140 Gene3D PAS domain 74 322 - -
Mch4g0317 1140 FunFam Phytochrome 976 1135 - -
Mch4g0317 1140 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1023 1135 IPR003594 -
Mch4g0317 1140 Gene3D - 955 1129 IPR036890 -
Mch4g0317 1140 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Mch4g0317 1140 SUPERFAMILY GAF domain-like 199 395 - -
Mch4g0317 1140 SMART HKATPase_4 1023 1137 IPR003594 -
Mch4g0317 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Mch4g0317 1140 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch4g0317 1140 CDD PAS 779 889 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0317 Mch-Chr4:2004598 Mch8g1989 Mch-Chr8:22070940 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40