Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0340 ATGTCTCAGAATTCTAAGTTCTTTTGTTCTAAGGTCCGATTACCCGCTGGTTTCAGGGCGAAGAGAGCCAAGGAGCGTTTCCATGGGCAACGGTGGAGTAACCTTCTTTATCTATTGCCATTTGGGGTGATTTTAATTCTGGGTCTTTGGTCTATGTTTAGTTTTTGTGATGAGAACTCAGTTGGGGAAGTGGGGATACCAGATATGTGTGAAGAGAAGGCTCGGAACTTGCTGCAGCATTTCAATGTCAGCGAGAGTCAACTTCATGCTTTGGCTTCATTATTCTTTTATTCAGATCAGAAGGTCTTGCATACTAGGGAAATTGGAAATGAGCATTCTCGAAGTTTGAATGGTTTAATAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTAGTTTTCATTTGAAATTAAGGAACCATAAACAAAAGCCAATAAAGCATCCATCGGTCGAGAATCAGCCAGTGATTCAGCTGCAGCAGGTCTTGCTTCAGCAGAAGCAGTTAGATCTATCTCCAAGTCATTCTAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTGATACTTGGGATTATTTCATCCATTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTTAGGAGAGAAGAAACACTTACTAACATGTGTGATGAGCGAGCGCGAATGCTACAAGATCAATTCAATGTTAGCATGAACCATGTCCATGCCTTGGCTATTCTGGTTTCCACTTTTCATCATGGAAAACATCCTTCTGCTATTGATCAGGCAAGTGATTATCTATCTTTTTTGTTATTGGATCATTACTCGGCTATCAATGATGGCAAATTCCTATTCACACAACTAAACTGTATCTTAAATGTACTCTCTTTCCCACAGGAAACATTCAGTGAGTATGCAGAAAGAACGGCTTTTGAACGACCTCTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTAATCATTCAGAAAGAAAGCAATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTAGGCCAGGACTGTATTCCTGAGAATTTAGATCCTGCTCCCTTTCAGGATGAATATGCACCTGTAATATTTTCACAAGAAACTGTATCACATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCAAGGGCTTCAGGGAAGGGAGTTCTGACATCTCCTTTCAAGCTACTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACATCGACCTTCCACCCGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGAGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTTCACCAACTTTCCAGTAAACAATCAATTATGGTTGATGTTTATGATACAACTAATGCATCTGCTCCCATCAAGATGTATGGATCAGATGTGACTGATACTGGTCTATTGCACATAAGCAACGTGGATTTTGGAGACCCCCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCTCAATTACCATGGATGGCCATCAATGCATCAGTGGGAGTCCTAGTTATCACTTTACTTGTTGGTCATATATTTTATGCGGCCATAAGTCGAATTGCGAAAGTGGAGGATGACTATCGTGACATGATGGAACTCAAAAGTCGTGCCGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCAACAGTTTCTCACGAGATTAGGACGCCAATGAACGGGGTTTTAGGGATGCTGAAAATGCTGATGGACACTGAGCTTGACCCAAACCAACTGGACTATGCCTTGACTGCATATGAGAGTGGGAAGGAATTAATATCACTAATAAATGAGGTTCTTGATCAGGCTAAAATAGAATCAGGCAGGCTTGAACTCGAAGATGTACCATTCGATCCACGTGCTTTACTGGATCATGTGCTTTCAATGTTTTCTGGAAAATGTAATGAGAAGGGGATAGAGTTAGCTGTTTATGTCTCTGATCTGGTCCCTGAAGTTCTCATTGGTGACCCGGGGCGCTTTCGGCAGATAATTACCAATCTTGTGGGAAATTCAATTAAGTTCACAAACGACAAAGGACACATATTTGTAACTGTACACCTGGCAGATGAAGTGAGGACTCCACTTGATGCAATGGACAATGTGCTGAGACAAAGCTTAAATCTAGTACAAGAGATGCCGAGAAAAAGTCACAATACATTAAGCGGGTTTCCAGTGGTCGAAAGGTGCAAGAGTTGGGAGCATTTCAAGATATTTAGTAGAACAGATGCAATGAAGGAGCATGACATGATTAAATTGCTTGTATCAGTCGAGGATACAGGTCATGGAATTCCTTTAGAAGCGCAAAATCGAATTTTTATGCCTTTTATGCAAGCTGATAGTTCCACGTCGCGCAAGTACGGTGGGACTGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGCAGCACATTTTCATTTACAGCGCGTTTGAGCAAAGGCGATATGATGTCTCTTGATACGAAGTGGCAGCAGTATGATCCAGCGACATTAGATTTCCGAGGACTGCGAGCATTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCCAGAGGCTAGGGATATTGGTGGATATAGTTTCAGGTCTGGTTTCAGCACATGAATACTTGACCAATATTTGCATCAAAAGTCCATCCAAGCCTTTGGCCATGGTGCTTATTGACAAAGACGTTTGGGATAACAATACCGGTCCCAGAATCCATCGCGTATTTAGAGATCATGGCATAATTGGCAAGGAAGAATCAACAGAAAGTCCTAAGATCTTTCTCTTAGCTACCTGCCCTCAAGAGATGGGCGATCTCAAATCCGCCGGTTACGTCAATAATATAATGAGAAAACCCCTTCGGTTGGGCGTCTTGATCGGATGCTTCCAGGAAGCATTTGGAAGCAGCAAGCATAAGAAGGTAAACAGAAAGAAACCGTCTATTCTCGGGACGTTACTGAGAGAGAAGCAAATATTGGTAGTCGACGATAATGCAGTTAATAGAAGAGTTGCAGAGGGTGCTCTAAAGAAATACGGAGCAAAGGTTACCTGTGTGGAAAGTGGTAGAGCCGCTCTTTCATTGTTGCATCCACCACACAAATTTAATGCTTGTTTCATGGATCTTCAGATGCCTGAGATGGATGGGTTTGAAGCGACACGGCAGATACGAAATATTGAGAATAAGGTTAACGAGGACATTGCTTCTGGGAAAGCATCAATCGAGACATTTGGGAATGTGGCTCATTGGCACATTCCAGTCTTGGCCATGACAGCTGATGTAATCCAGGCTACAAATGAAGCATGCATGGAGTGCGGGATGGACGGTTATGTCTCAAAGCCTTTCGAAGAAGAACAACTATATTCAGAGGTGGCACGTTTCTTCGAGTCCGAGGGTTGA 3552 42.45 MSQNSKFFCSKVRLPAGFRAKRAKERFHGQRWSNLLYLLPFGVILILGLWSMFSFCDENSVGEVGIPDMCEEKARNLLQHFNVSESQLHALASLFFYSDQKVLHTREIGNEHSRSLNGLIMACLWILAVVISCLKMSSFHLKLRNHKQKPIKHPSVENQPVIQLQQVLLQQKQLDLSPSHSKGAGKWRKKLLIIFVILGIISSIWLFWYLNNKIIFRREETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQASDYLSFLLLDHYSAINDGKFLFTQLNCILNVLSFPQETFSEYAERTAFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLGQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNIDLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIMVDVYDTTNASAPIKMYGSDVTDTGLLHISNVDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVEDDYRDMMELKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTELDPNQLDYALTAYESGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDHVLSMFSGKCNEKGIELAVYVSDLVPEVLIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADEVRTPLDAMDNVLRQSLNLVQEMPRKSHNTLSGFPVVERCKSWEHFKIFSRTDAMKEHDMIKLLVSVEDTGHGIPLEAQNRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTARLSKGDMMSLDTKWQQYDPATLDFRGLRALVIDNRSIRAEVTKYHLQRLGILVDIVSGLVSAHEYLTNICIKSPSKPLAMVLIDKDVWDNNTGPRIHRVFRDHGIIGKEESTESPKIFLLATCPQEMGDLKSAGYVNNIMRKPLRLGVLIGCFQEAFGSSKHKKVNRKKPSILGTLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAALSLLHPPHKFNACFMDLQMPEMDGFEATRQIRNIENKVNEDIASGKASIETFGNVAHWHIPVLAMTADVIQATNEACMECGMDGYVSKPFEEEQLYSEVARFFESEG 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2115024 2127377 + MC04g0267 Mch4g0340 685052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0340 1183 ProSiteProfiles Response regulatory domain profile. 1042 1179 IPR001789 GO:0000160(InterPro)
Mch4g0340 1183 CDD HisKA 581 642 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g0340 1183 SMART REC_2 1041 1175 IPR001789 GO:0000160(InterPro)
Mch4g0340 1183 Pfam CHASE domain 302 493 IPR006189 -
Mch4g0340 1183 Gene3D - 62 101 - -
Mch4g0340 1183 Gene3D - 210 262 - -
Mch4g0340 1183 ProSiteProfiles CHASE domain profile. 296 520 IPR006189 -
Mch4g0340 1183 Gene3D CHASE domain 301 527 IPR042240 -
Mch4g0340 1183 SMART HKATPase_4 693 865 IPR003594 -
Mch4g0340 1183 FunFam Histidine kinase 4 553 644 - -
Mch4g0340 1183 SUPERFAMILY CheY-like 1039 1179 IPR011006 -
Mch4g0340 1183 Gene3D - 645 867 IPR036890 -
Mch4g0340 1183 ProSiteProfiles Histidine kinase domain profile. 588 865 IPR005467 -
Mch4g0340 1183 SMART HisKA_10 581 646 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g0340 1183 FunFam Histidine kinase 4 300 527 - -
Mch4g0340 1183 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 635 860 IPR036890 -
Mch4g0340 1183 CDD HATPase_EvgS-ArcB-TorS-like 698 863 - -
Mch4g0340 1183 Pfam Response regulator receiver domain 1043 1124 IPR001789 GO:0000160(InterPro)
Mch4g0340 1183 Pfam His Kinase A (phospho-acceptor) domain 581 646 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g0340 1183 CDD REC_hyHK_CKI1_RcsC-like 1043 1172 - -
Mch4g0340 1183 SUPERFAMILY CheY-like 884 1018 IPR011006 -
Mch4g0340 1183 PANTHER TWO-COMPONENT HISTIDINE KINASE 177 1178 IPR050956 -
Mch4g0340 1183 PRINTS Bacterial sensor protein C-terminal signature 790 804 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g0340 1183 PRINTS Bacterial sensor protein C-terminal signature 825 843 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g0340 1183 PRINTS Bacterial sensor protein C-terminal signature 849 862 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g0340 1183 PRINTS Bacterial sensor protein C-terminal signature 808 818 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g0340 1183 SMART CHASE_2 296 495 IPR006189 -
Mch4g0340 1183 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 789 863 IPR003594 -
Mch4g0340 1183 Gene3D - 1036 1182 - -
Mch4g0340 1183 Gene3D - 553 644 - -
Mch4g0340 1183 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 567 647 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g0340 1183 Coils Coil 558 578 - -
Mch4g0340 1183 FunFam Histidine kinase 3 1036 1183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0478 Mch-Chr2:3455352 Mch4g0340 Mch-Chr4:2115024 0 dispersed
Mch4g0340 Mch-Chr4:2115024 Mch7g0079 Mch-Chr7:832106 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43141 PF03924 CHASE 9.10E-34 CL0165 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0340 K14489 - vvi:100263145 1452.19