Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0341 | ATGGTTTCTTCGGGGGACCAAATAGAAAATGAAGTTGATTCTGATAGATTGGAGCATGAACACAGTTCAGACAGTCAACCGCAAGTGTCTCAGGAGGACCCTAGTGGAACTAATGAATCAAAATCAGATCACGAATACTCTGCGGATGCCAAGAAGACACTTGAAGAAGCTGTCAGGCAGCCTGATGTTTCGATCGAACAATTGGATCAAGGGGGCATCTCCAATATAGTGTCTGAGAAAGTGACCCGTAACCCGATTACTGCAGACCAGGACTCACATCCTGATTTGAAGGGAAGTATTACTCCTACAGTACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGAAAATATGGTCAGAAACTCGTAAAGGGAAATGTCTTTGTAAGAAGCTATTACAGATGCACGTTTCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGACACTGTTTACTTTGGTCAGCATGATCACCCTAAACCTCAACATCATATTCCGGTTGCTGTTGGACTGGTTACCATGGTTGTAGAAAAACCCGATGATCATGCTTCTGGAAGTTCTCAAGATAAGGCCTCCATTGCGCTTGGTCAGCCACCTCATCAAACTGAACCGGCTGATACGCTTCAACTGTCATCGGTCGCAGCCAGTGATAATGTAAAAGATGAAGTTTCAAAAAGGTCTAGGATTAATGATGAGGATGACAGTGATGAAATTCCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCTGACAAGTCAACAGTCGAACCTCGCGTCGTTGTTCAAACTCCTAGCGAGGTTGACATTGTCAATGACGGGTATCGCTGGCGGAAGTATGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGTTCAAGTCCTGGATGCCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGACCCCAAAGTGGTGCTTACCACGTACGAGGGTCAGCATGACCATGATATGCCTCCTGCAAGGACCGTGACATTGAACTCAGCTGGGCCAGGCATTTGCACACCACCCCATAATGATGAGAAGAAAACAAAATCGGTCGGTGGTCCTGCTGGCCATGACATGGTGGTTCGTGCTAGTAAGGATCCTCGAATCAATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGCGTGCGACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTAAATTCCAGTTCAGGAGTTGGGAGTGGCCAAAATAAGCAGCAGCTGAAAGTAGCAATTGAAAGCTAA | 1320 | 45.0 | MVSSGDQIENEVDSDRLEHEHSSDSQPQVSQEDPSGTNESKSDHEYSADAKKTLEEAVRQPDVSIEQLDQGGISNIVSEKVTRNPITADQDSHPDLKGSITPTVREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTFPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQHHIPVAVGLVTMVVEKPDDHASGSSQDKASIALGQPPHQTEPADTLQLSSVAASDNVKDEVSKRSRINDEDDSDEIPDLKREKKRCNIDVTVADKSTVEPRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNSAGPGICTPPHNDEKKTKSVGGPAGHDMVVRASKDPRINSSSEGKLIEKNGKSRATEASDGIVLDMVVNSSSGVGSGQNKQQLKVAIES | 439 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2123975 | 2128899 | - | MC04g0268 | Mch4g0341 | 685053 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0341 | 439 | SMART | WRKY_cls | 109 | 167 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | SMART | WRKY_cls | 282 | 341 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 17 | 168 | IPR044810 | GO:0003700(InterPro) | |
| Mch4g0341 | 439 | SUPERFAMILY | WRKY DNA-binding domain | 274 | 342 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 79 | 98 | - | - | |
| Mch4g0341 | 439 | SUPERFAMILY | WRKY DNA-binding domain | 104 | 168 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 209 | 225 | - | - | |
| Mch4g0341 | 439 | Gene3D | WRKY domain | 97 | 169 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 420 | 439 | - | - | |
| Mch4g0341 | 439 | Gene3D | WRKY domain | 269 | 335 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | FunFam | WRKY transcription factor | 100 | 169 | - | - | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
| Mch4g0341 | 439 | Pfam | WRKY DNA -binding domain | 283 | 340 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 79 | 97 | - | - | |
| Mch4g0341 | 439 | FunFam | WRKY transcription factor 57 | 268 | 342 | - | - | |
| Mch4g0341 | 439 | ProSiteProfiles | WRKY domain profile. | 277 | 342 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 37 | 59 | - | - | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 387 | 409 | - | - | |
| Mch4g0341 | 439 | MobiDBLite | consensus disorder prediction | 187 | 245 | - | - | |
| Mch4g0341 | 439 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0341 | Mch-Chr4:2123975 | Mch6g1412 | Mch-Chr6:12571243 | 1.40E-62 | dispersed | |
| Mch4g0341 | Mch-Chr4:2123975 | Mch4g2348 | Mch-Chr4:24759190 | 5.91E-64 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43142 | PF03106 | WRKY | 3.00E-26 | CL0274 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g0341 | K18834 | - | csv:101212482 | 629.017 |