Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0341 ATGGTTTCTTCGGGGGACCAAATAGAAAATGAAGTTGATTCTGATAGATTGGAGCATGAACACAGTTCAGACAGTCAACCGCAAGTGTCTCAGGAGGACCCTAGTGGAACTAATGAATCAAAATCAGATCACGAATACTCTGCGGATGCCAAGAAGACACTTGAAGAAGCTGTCAGGCAGCCTGATGTTTCGATCGAACAATTGGATCAAGGGGGCATCTCCAATATAGTGTCTGAGAAAGTGACCCGTAACCCGATTACTGCAGACCAGGACTCACATCCTGATTTGAAGGGAAGTATTACTCCTACAGTACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGAAAATATGGTCAGAAACTCGTAAAGGGAAATGTCTTTGTAAGAAGCTATTACAGATGCACGTTTCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGACACTGTTTACTTTGGTCAGCATGATCACCCTAAACCTCAACATCATATTCCGGTTGCTGTTGGACTGGTTACCATGGTTGTAGAAAAACCCGATGATCATGCTTCTGGAAGTTCTCAAGATAAGGCCTCCATTGCGCTTGGTCAGCCACCTCATCAAACTGAACCGGCTGATACGCTTCAACTGTCATCGGTCGCAGCCAGTGATAATGTAAAAGATGAAGTTTCAAAAAGGTCTAGGATTAATGATGAGGATGACAGTGATGAAATTCCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCTGACAAGTCAACAGTCGAACCTCGCGTCGTTGTTCAAACTCCTAGCGAGGTTGACATTGTCAATGACGGGTATCGCTGGCGGAAGTATGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGTTCAAGTCCTGGATGCCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGACCCCAAAGTGGTGCTTACCACGTACGAGGGTCAGCATGACCATGATATGCCTCCTGCAAGGACCGTGACATTGAACTCAGCTGGGCCAGGCATTTGCACACCACCCCATAATGATGAGAAGAAAACAAAATCGGTCGGTGGTCCTGCTGGCCATGACATGGTGGTTCGTGCTAGTAAGGATCCTCGAATCAATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGCGTGCGACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTAAATTCCAGTTCAGGAGTTGGGAGTGGCCAAAATAAGCAGCAGCTGAAAGTAGCAATTGAAAGCTAA 1320 45.0 MVSSGDQIENEVDSDRLEHEHSSDSQPQVSQEDPSGTNESKSDHEYSADAKKTLEEAVRQPDVSIEQLDQGGISNIVSEKVTRNPITADQDSHPDLKGSITPTVREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTFPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQHHIPVAVGLVTMVVEKPDDHASGSSQDKASIALGQPPHQTEPADTLQLSSVAASDNVKDEVSKRSRINDEDDSDEIPDLKREKKRCNIDVTVADKSTVEPRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNSAGPGICTPPHNDEKKTKSVGGPAGHDMVVRASKDPRINSSSEGKLIEKNGKSRATEASDGIVLDMVVNSSSGVGSGQNKQQLKVAIES 439
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2123975 2128899 - MC04g0268 Mch4g0341 685053
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0341 439 SMART WRKY_cls 109 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 SMART WRKY_cls 282 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 168 IPR044810 GO:0003700(InterPro)
Mch4g0341 439 SUPERFAMILY WRKY DNA-binding domain 274 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 MobiDBLite consensus disorder prediction 79 98 - -
Mch4g0341 439 SUPERFAMILY WRKY DNA-binding domain 104 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 MobiDBLite consensus disorder prediction 1 71 - -
Mch4g0341 439 MobiDBLite consensus disorder prediction 209 225 - -
Mch4g0341 439 Gene3D WRKY domain 97 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 MobiDBLite consensus disorder prediction 420 439 - -
Mch4g0341 439 Gene3D WRKY domain 269 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 FunFam WRKY transcription factor 100 169 - -
Mch4g0341 439 MobiDBLite consensus disorder prediction 226 245 - -
Mch4g0341 439 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 MobiDBLite consensus disorder prediction 9 26 - -
Mch4g0341 439 MobiDBLite consensus disorder prediction 79 97 - -
Mch4g0341 439 FunFam WRKY transcription factor 57 268 342 - -
Mch4g0341 439 ProSiteProfiles WRKY domain profile. 277 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0341 439 MobiDBLite consensus disorder prediction 37 59 - -
Mch4g0341 439 MobiDBLite consensus disorder prediction 387 409 - -
Mch4g0341 439 MobiDBLite consensus disorder prediction 187 245 - -
Mch4g0341 439 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0341 Mch-Chr4:2123975 Mch6g1412 Mch-Chr6:12571243 1.40E-62 dispersed
Mch4g0341 Mch-Chr4:2123975 Mch4g2348 Mch-Chr4:24759190 5.91E-64 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43142 PF03106 WRKY 3.00E-26 CL0274 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0341 K18834 - csv:101212482 629.017