Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0358 | ATGGGCCTCTCTAGTCTCCCAGCTCCATCCGAAGGAGTTCTCAACGTGCTTGTCGTAAACACGGCACTGTCCATTTCCATGTTAAAATGCATTGTCCGTTTGATCCTTCAAATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTACCATCATCAGATTTCATTGAAAATCCATCCGAGTTGGGAGATTCAAGTTTTGGTTCCTCTTGGAGTTACACCGAGGCATTTCGGAACCGATATCCAACTATTCGGTTTGATACAGTACACGGCTCCAAACGTCTTGAACATGACTGCTCAGTCTGCTTATCTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACGGAATGCTTGGAGAAGTGGCTGGACTACTGGAACAGTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATTGTGCTTTTGGTGA | 465 | 44.3 | MGLSSLPAPSEGVLNVLVVNTALSISMLKCIVRLILQIVGIRLSSPSSLVPSSDFIENPSELGDSSFGSSWSYTEAFRNRYPTIRFDTVHGSKRLEHDCSVCLSQFEPESEINHLSCGHLFHTECLEKWLDYWNSTCPLCRTPLMSEEEKLCFW | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2246652 | 2248410 | - | MC04g0283 | Mch4g0358 | 685070 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0358 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
Mch4g0358 | 154 | SUPERFAMILY | RING/U-box | 92 | 145 | - | - | |
Mch4g0358 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
Mch4g0358 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
Mch4g0358 | 154 | PANTHER | - | 1 | 154 | IPR044249 | - | |
Mch4g0358 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 146 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g0358 | Mch-Chr4:2246652 | Mch5g0404 | Mch-Chr5:2769373 | 1.85E-12 | dispersed | |
Mch2g0458 | Mch-Chr2:3340651 | Mch4g0358 | Mch-Chr4:2246652 | 1.02E-69 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0358 | K16285 | - | csv:101215843 | 254.988 |