Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0358 ATGGGCCTCTCTAGTCTCCCAGCTCCATCCGAAGGAGTTCTCAACGTGCTTGTCGTAAACACGGCACTGTCCATTTCCATGTTAAAATGCATTGTCCGTTTGATCCTTCAAATTGTAGGAATCCGTCTCTCATCGCCATCATCCTTGGTACCATCATCAGATTTCATTGAAAATCCATCCGAGTTGGGAGATTCAAGTTTTGGTTCCTCTTGGAGTTACACCGAGGCATTTCGGAACCGATATCCAACTATTCGGTTTGATACAGTACACGGCTCCAAACGTCTTGAACATGACTGCTCAGTCTGCTTATCTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACGGAATGCTTGGAGAAGTGGCTGGACTACTGGAACAGTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATTGTGCTTTTGGTGA 465 44.3 MGLSSLPAPSEGVLNVLVVNTALSISMLKCIVRLILQIVGIRLSSPSSLVPSSDFIENPSELGDSSFGSSWSYTEAFRNRYPTIRFDTVHGSKRLEHDCSVCLSQFEPESEINHLSCGHLFHTECLEKWLDYWNSTCPLCRTPLMSEEEKLCFW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2246652 2248410 - MC04g0283 Mch4g0358 685070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0358 154 Pfam Ring finger domain 98 141 IPR001841 -
Mch4g0358 154 SUPERFAMILY RING/U-box 92 145 - -
Mch4g0358 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Mch4g0358 154 SMART ring_2 99 140 IPR001841 -
Mch4g0358 154 PANTHER - 1 154 IPR044249 -
Mch4g0358 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 146 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0358 Mch-Chr4:2246652 Mch5g0404 Mch-Chr5:2769373 1.85E-12 dispersed
Mch2g0458 Mch-Chr2:3340651 Mch4g0358 Mch-Chr4:2246652 1.02E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0358 K16285 - csv:101215843 254.988