Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0360 ATGGGTTACATATGTGATTTCTGTGCGCATCAAAGGGCGATAGTTTACTGCCGATCTGATTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAACGCTTTGTCAAGGCGCCACTCAAGAACGTTGTTATGTGATAGGTGCCATTCGCAACCTGCATTTGTTAGATGTCCTGAGGAGAATATTTCTCTTTGTCAAAGTTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGGAAGAGGCAACCGATCAATTGTTACTCCGGATGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCCCTTCTGTAAGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGTATTGCTGAAAATAGTGCAGTAAATGCCTGGGGTCCTGATGATAATGCTGGTCAAAATGATGAAACCACTGGATTGTCAAGTTTGGATAAATCAATTTGGTACGGATCCTCTTCAGTGCCTCAATATTTATCCAAGCCTCAGATTATGGACCAACAAATGACTACAGATGTAACTTCACCCAAGTTACACTGTCGTGGAACACAAGGTCCTGGATTCGACATTGAGGACGACCTCTTCGAGAATTTAAATATGGACGAAGATGGTTTGGATATTGAAAACTATGATGAACTATTTGGTGTATGTCGCAGTTATTCCGAAGAGTTATTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATCAAAGGTATATCTGCTGCCAAATCCGGTTGCCCAGAGGGGTCTTCAGTTGGGTTAGTTAACAATATGATGCGGCCAGCAAGCAGTAATGCAGCATCTGCAGATTCTGTGATGAGTTCGAAGACTGAACCAATTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTGTCATTTTCTGGCCTGACCGGAGAGAGTAGTGCCGGAGATCATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTCCGATGACCACTGAGAGCTCTTTCCAGTCATCTAACCGCAGCGATGCTGTACTGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAAAAGGTGAGGTATGCCTCTCGCAAAGTGAGAGCCGATACGAGAAGACGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1215 44.36 MGYICDFCAHQRAIVYCRSDSAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQPAFVRCPEENISLCQSCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDNAGQNDETTGLSSLDKSIWYGSSSVPQYLSKPQIMDQQMTTDVTSPKLHCRGTQGPGFDIEDDLFENLNMDEDGLDIENYDELFGVCRSYSEELLENGGIDSLFRIKGISAAKSGCPEGSSVGLVNNMMRPASSNAASADSVMSSKTEPILCYNNKQEHSSLSFSGLTGESSAGDHQDCGASSMLLMGEPPWCPMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2257391 2263928 - MC04g0285 Mch4g0360 685072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0360 404 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Mch4g0360 404 Pfam CCT motif 347 389 IPR010402 GO:0005515(InterPro)
Mch4g0360 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 394 - -
Mch4g0360 404 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515(InterPro)
Mch4g0360 404 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch4g0360 404 CDD Bbox1_BBX-like 4 47 IPR049808 -
Mch4g0360 404 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0360 Mch-Chr4:2257391 Mch9g1922 Mch-Chr9:20757163 1.25E-13 dispersed
Mch2g0622 Mch-Chr2:4259185 Mch4g0360 Mch-Chr4:2257391 1.40E-41 transposed
Mch5g0998 Mch-Chr5:7697334 Mch4g0360 Mch-Chr4:2257391 6.55E-19 transposed
Mch6g0556 Mch-Chr6:3761617 Mch4g0360 Mch-Chr4:2257391 6.99E-10 transposed
Mch2g0456 Mch-Chr2:3332379 Mch4g0360 Mch-Chr4:2257391 4.87E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43145 PF06203 CCT 6.20E-16 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0360 - - - 0.0