Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0360 ATGGGTTACATATGTGATTTCTGTGCGCATCAAAGGGCGATAGTTTACTGCCGATCTGATTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAACGCTTTGTCAAGGCGCCACTCAAGAACGTTGTTATGTGATAGGTGCCATTCGCAACCTGCATTTGTTAGATGTCCTGAGGAGAATATTTCTCTTTGTCAAAGTTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGGAAGAGGCAACCGATCAATTGTTACTCCGGATGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCCCTTCTGTAAGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGTATTGCTGAAAATAGTGCAGTAAATGCCTGGGGTCCTGATGATAATGCTGGTCAAAATGATGAAACCACTGGATTGTCAAGTTTGGATAAATCAATTTGGTACGGATCCTCTTCAGTGCCTCAATATTTATCCAAGCCTCAGATTATGGACCAACAAATGACTACAGATGTAACTTCACCCAAGTTACACTGTCGTGGAACACAAGGTCCTGGATTCGACATTGAGGACGACCTCTTCGAGAATTTAAATATGGACGAAGATGGTTTGGATATTGAAAACTATGATGAACTATTTGGTGTATGTCGCAGTTATTCCGAAGAGTTATTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATCAAAGGTATATCTGCTGCCAAATCCGGTTGCCCAGAGGGGTCTTCAGTTGGGTTAGTTAACAATATGATGCGGCCAGCAAGCAGTAATGCAGCATCTGCAGATTCTGTGATGAGTTCGAAGACTGAACCAATTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTGTCATTTTCTGGCCTGACCGGAGAGAGTAGTGCCGGAGATCATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTCCGATGACCACTGAGAGCTCTTTCCAGTCATCTAACCGCAGCGATGCTGTACTGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAAAAGGTGAGGTATGCCTCTCGCAAAGTGAGAGCCGATACGAGAAGACGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1215 44.36 MGYICDFCAHQRAIVYCRSDSAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQPAFVRCPEENISLCQSCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDNAGQNDETTGLSSLDKSIWYGSSSVPQYLSKPQIMDQQMTTDVTSPKLHCRGTQGPGFDIEDDLFENLNMDEDGLDIENYDELFGVCRSYSEELLENGGIDSLFRIKGISAAKSGCPEGSSVGLVNNMMRPASSNAASADSVMSSKTEPILCYNNKQEHSSLSFSGLTGESSAGDHQDCGASSMLLMGEPPWCPMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2257391 2263928 - MC04g0285 Mch4g0360 685072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0360 404 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Mch4g0360 404 Pfam CCT motif 347 389 IPR010402 GO:0005515(InterPro)
Mch4g0360 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 394 - -
Mch4g0360 404 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515(InterPro)
Mch4g0360 404 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch4g0360 404 CDD Bbox1_BBX-like 4 47 IPR049808 -
Mch4g0360 404 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0360 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0360 Mch-Chr4:2257391 Mch9g1922 Mch-Chr9:20757163 1.25E-13 dispersed
Mch2g0622 Mch-Chr2:4259185 Mch4g0360 Mch-Chr4:2257391 1.40E-41 transposed
Mch5g0998 Mch-Chr5:7697334 Mch4g0360 Mch-Chr4:2257391 6.55E-19 transposed
Mch6g0556 Mch-Chr6:3761617 Mch4g0360 Mch-Chr4:2257391 6.99E-10 transposed
Mch2g0456 Mch-Chr2:3332379 Mch4g0360 Mch-Chr4:2257391 4.87E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.0e-93 339.0
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 7.0e-90 327.8
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch4g0563 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.8 2.7e-53 206.1
Mch11g0147 . 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 52.2 1.3e-50 197.2
Mch10g1031 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 2.9e-76 282.3
Mch10g0804 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 2.3e-56 215.3
Mch1g1566 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 75.2 1.4e-48 189.5
Mch10g0804 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.5e-58 221.5
Mch1g1566 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 62.0 4.6e-50 194.5
Mch4g0563 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 50.4 2.9e-52 202.2
Mch8g0821 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 8.1e-47 184.1
Mch2g1076 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 4.3e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43145 PF06203 CCT 6.20E-16 CL0281 Mch TF