Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0368 ACGTTCCGTACGCGTGTAAGAGAAAGAGATCGGAAAGTTGATGAGGAGAGCGAAACCAAAGACCCATCAAGCTATAATCTCTCATCTTCTGCTTATCAAATCAGCCCTACAGAGAAGAGGACACCAACTGAAGTCTTTCAACTGCCTGTAAGCTCAAGAGATGGGCATTCCAAAGACGAGAGTGGTGCCACTCATGTACAGGATGAGGCTAAAGCATCCCTCACTTCCTCTCCTCCTGCTGTCAGCATTGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGATATCACAAAGACATATGCAAAGAAATTTGATCGAATCGGGTCATCTTTTGCTGAACTCTTGGAAGCAAACATGACAGAGAGAATTGCAGAGGAGATTAAGAATGATGTTTTGTCGTCGCTGCAATTGACTTTTGTTGTATCGGATGCAACGAAACCAGATTGCCCCATCATGTTTGCCAGTAATGGATTCTTGGTCATGACTGGATATACGTCAGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGTCAGACAAGAATGAAGTAGCAAAAATACGAGATGCGATCAGAAAGGGGAACAGCTATTGTGGCAAGCTCTTGAACTACAAAAAAAATGGCACCCCATTCTGGAATCTTCTCACTATTGGTCCTGTCAAAGATTCACATGGCAACACCATCAAATTTGTTGGAATGCAGGTTGAGATTGGAAAAAACACGGAAGAGAAAGAGAAGAGAATGAGGTCCATGTCCATTACAGAGGTCCAAACTGAGAAGGCAATTAAGTCCATTGTAGATGTCCCAACTGCGAGAAGTCTAAGGTCTTACATTCGGTCAAAAAGGCATGATACTGATAGAAAGCACAAAGAGCTGGAAACAACCGAAATTGGTTATGCGCTGCCCGAGACCGTGGATAATGAGAATATTAGCATACCTGATAACCAAAAGGCTCAGTTCAAAGAAAGGCCTATAGGCTCAGTAGAACATGAAGGAAGGAGAATTATTGAGACATCGGTTTTGAAGCCTAAGGACGGTGGTCGTGTTGCTAAAAGAGAAAGGGACATACGTCAAGGAATTGATTTAGCAACCTCACTGGAACGGATAGAGAAATCCTTTTTTATCACTAACCCAAGACTACCTGATAATCCTATTATATTTGCATCTGATATATTTCTCGACTCCACGGAGTATACACGTGAAGAAGTGATAGGAAGAAACATTGGGTTTCTTGAAGGACCCAAAACAGATCAAGCAACTATCTCAAGGATAAAGGATGCAATTGAAGAGCAGAAAGAAATTACTGTTCAGATAATCAACTATACAAGGAGTGGAAAGAAGTTTCCAAATTTATTCCACCTGCAACCTGTGTGTGGTCAGAAGGGCGAGCTTCAATACTTCATTAGTGTACAACTTGATGTAAAACCTTTGAGCGACCGACTTTCAGAAATAACGGAACATCAAAGTGCTAAGGTGGTCAAAGCTATAGCAGAAAATGTTGACAAGGCTGTCCGCGAACTTCCCGATGCCAACTTGAAACCAAATAATCTGTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTTCTTCCTGGCTAGCAATTCAAAAGATTACAAGTCATGGTGAAAAGGTTGGACTCCATCATTTTAAGCCAATCAAACCACTGGGTTTTGGAGACATTGGCAGCGTTCATTTGGTAGAACTGAAAGGGACAGGTGAATTCTTTGCTATGAAAGCAATAGAGAAGTCGGTGATTTTAAATCGTAACAAGGTTCACCGAGCATGCATCGAAAGGGAAATCATAGCACTTCTGGATCATCCTTTTATGCCAACACTATACTCTTCATTTCAGACGCCTACACACATTTTTCTGATTATAGACTTCTGCCCTGGTGGAGAGTTATTTGCCTTTCTTGACAAGCAGCCCATGAAAATGTTTAAAGAGGAAGTTGCAAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTAGAATACCTTCACTGTTTAGGCATTATCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAGAAGGATGGACATATCGTCCTCACTGATTTTGATTTATCGTTTAAGACATCCGACGTGCAAAACATAGAGTCTCCACCGCCGAAAAAGACGAGATATTGGCATGGACAACCGCCCGTGTTCTTTGTCGAACCTGTTGCAAAATTGAATTCATTCGTTGGAACTGAAGAGTACATTGCTCCTGAGATTATAATGGGAGATGGCCACAGTAGCTCTGTTGACTGGTGGACTCTTGGTATTTTGTTGTATGAGATGCTGTACGGTCGCACTCCCTTCAAAGGAAAGAACAGGAGGAAGACATTTGCCAATATTTTATTCAAGGATTTAACCTTCCCCTTTAGCATTCAGGCAAGTTTTGCAGCAAAGCAACTGATTGATGCACTACTACAGCGAGACCCTACCCGTCGTCTAGGATCAAGTACCGGTGCAGATGAAATCAAGCGACACCCTTTTTTCCATCAAATAGATTGGCCTAAAATCCGAACCATGACCCCACCATCACCAGATGTAGCTCTTCAGTTAATTGAGAGAGATACAAAAGATGGAGGGCTCAGTCATTCAACAGGCAATGATATTTTCTGA 2655 42.41 TFRTRVRERDRKVDEESETKDPSSYNLSSSAYQISPTEKRTPTEVFQLPVSSRDGHSKDESGATHVQDEAKASLTSSPPAVSIEASRKWMAFESDITKTYAKKFDRIGSSFAELLEANMTERIAEEIKNDVLSSLQLTFVVSDATKPDCPIMFASNGFLVMTGYTSEEVIGRNCRFLQGPESDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTIGPVKDSHGNTIKFVGMQVEIGKNTEEKEKRMRSMSITEVQTEKAIKSIVDVPTARSLRSYIRSKRHDTDRKHKELETTEIGYALPETVDNENISIPDNQKAQFKERPIGSVEHEGRRIIETSVLKPKDGGRVAKRERDIRQGIDLATSLERIEKSFFITNPRLPDNPIIFASDIFLDSTEYTREEVIGRNIGFLEGPKTDQATISRIKDAIEEQKEITVQIINYTRSGKKFPNLFHLQPVCGQKGELQYFISVQLDVKPLSDRLSEITEHQSAKVVKAIAENVDKAVRELPDANLKPNNLWAIYCQPVLPRPHKKYSSSWLAIQKITSHGEKVGLHHFKPIKPLGFGDIGSVHLVELKGTGEFFAMKAIEKSVILNRNKVHRACIEREIIALLDHPFMPTLYSSFQTPTHIFLIIDFCPGGELFAFLDKQPMKMFKEEVARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTSDVQNIESPPPKKTRYWHGQPPVFFVEPVAKLNSFVGTEEYIAPEIIMGDGHSSSVDWWTLGILLYEMLYGRTPFKGKNRRKTFANILFKDLTFPFSIQASFAAKQLIDALLQRDPTRRLGSSTGADEIKRHPFFHQIDWPKIRTMTPPSPDVALQLIERDTKDGGLSHSTGNDIF 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2323977 2334823 + MC04g0293 Mch4g0368 685080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0368 884 Pfam Protein kinase domain 561 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0368 884 CDD PAS 151 240 IPR000014 -
Mch4g0368 884 Gene3D Phosphorylase Kinase; domain 1 556 641 - -
Mch4g0368 884 MobiDBLite consensus disorder prediction 1 79 - -
Mch4g0368 884 SMART pac_2 201 243 IPR001610 -
Mch4g0368 884 SMART pac_2 438 480 IPR001610 -
Mch4g0368 884 ProSiteProfiles Protein kinase domain profile. 558 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0368 884 NCBIfam PAS domain S-box protein 388 478 IPR000014 -
Mch4g0368 884 NCBIfam PAS domain S-box protein 151 248 IPR000014 -
Mch4g0368 884 ProSiteProfiles PAS repeat profile. 124 197 IPR000014 -
Mch4g0368 884 MobiDBLite consensus disorder prediction 1 21 - -
Mch4g0368 884 PANTHER FLIPPASE KINASE 1-RELATED 512 858 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch4g0368 884 ProSiteProfiles PAC domain profile. 198 252 IPR000700 -
Mch4g0368 884 SMART pas_2 126 195 IPR000014 -
Mch4g0368 884 SMART pas_2 363 432 IPR000014 -
Mch4g0368 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0368 884 SMART serkin_6 558 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0368 884 FunFam Serine/threonine-protein kinase nrc-2 642 860 - -
Mch4g0368 884 Gene3D Transferase(Phosphotransferase) domain 1 642 857 - -
Mch4g0368 884 MobiDBLite consensus disorder prediction 22 50 - -
Mch4g0368 884 SUPERFAMILY PYP-like sensor domain (PAS domain) 377 477 IPR035965 -
Mch4g0368 884 CDD PAS 384 477 IPR000014 -
Mch4g0368 884 Gene3D PAS domain 138 300 - -
Mch4g0368 884 Pfam PAS domain 376 477 IPR000014 -
Mch4g0368 884 Pfam PAS domain 145 240 IPR000014 -
Mch4g0368 884 ProSiteProfiles PAC domain profile. 435 489 IPR000700 -
Mch4g0368 884 CDD STKc_phototropin_like 556 857 - -
Mch4g0368 884 Gene3D PAS domain 351 510 - -
Mch4g0368 884 SUPERFAMILY Protein kinase-like (PK-like) 535 865 IPR011009 -
Mch4g0368 884 SUPERFAMILY PYP-like sensor domain (PAS domain) 145 238 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0963 Mch-Chr2:6476122 Mch4g0368 Mch-Chr4:2323977 9.39E-288 dispersed
Mch3g0725 Mch-Chr3:11538666 Mch4g0368 Mch-Chr4:2323977 5.22E-97 dispersed
Mch4g0368 Mch-Chr4:2323977 Mch8g1468 Mch-Chr8:10997803 2.31E-99 dispersed
Mch2g0126 Mch-Chr2:950446 Mch4g0368 Mch-Chr4:2323977 6.33E-74 transposed
Mch5g0666 Mch-Chr5:4474906 Mch4g0368 Mch-Chr4:2323977 9.03E-31 transposed
Mch5g2014 Mch-Chr5:19778079 Mch4g0368 Mch-Chr4:2323977 1.38E-58 transposed
Mch6g0191 Mch-Chr6:1276298 Mch4g0368 Mch-Chr4:2323977 3.21E-62 transposed
Mch9g1833 Mch-Chr9:20125759 Mch4g0368 Mch-Chr4:2323977 1.66E-51 transposed
Mch2g0443 Mch-Chr2:3222422 Mch4g0368 Mch-Chr4:2323977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77313 PF00069 Pkinase 4.60E-62 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0368 K20715 - csv:101213364 1318.91