Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0368 | ACGTTCCGTACGCGTGTAAGAGAAAGAGATCGGAAAGTTGATGAGGAGAGCGAAACCAAAGACCCATCAAGCTATAATCTCTCATCTTCTGCTTATCAAATCAGCCCTACAGAGAAGAGGACACCAACTGAAGTCTTTCAACTGCCTGTAAGCTCAAGAGATGGGCATTCCAAAGACGAGAGTGGTGCCACTCATGTACAGGATGAGGCTAAAGCATCCCTCACTTCCTCTCCTCCTGCTGTCAGCATTGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGATATCACAAAGACATATGCAAAGAAATTTGATCGAATCGGGTCATCTTTTGCTGAACTCTTGGAAGCAAACATGACAGAGAGAATTGCAGAGGAGATTAAGAATGATGTTTTGTCGTCGCTGCAATTGACTTTTGTTGTATCGGATGCAACGAAACCAGATTGCCCCATCATGTTTGCCAGTAATGGATTCTTGGTCATGACTGGATATACGTCAGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGTCAGACAAGAATGAAGTAGCAAAAATACGAGATGCGATCAGAAAGGGGAACAGCTATTGTGGCAAGCTCTTGAACTACAAAAAAAATGGCACCCCATTCTGGAATCTTCTCACTATTGGTCCTGTCAAAGATTCACATGGCAACACCATCAAATTTGTTGGAATGCAGGTTGAGATTGGAAAAAACACGGAAGAGAAAGAGAAGAGAATGAGGTCCATGTCCATTACAGAGGTCCAAACTGAGAAGGCAATTAAGTCCATTGTAGATGTCCCAACTGCGAGAAGTCTAAGGTCTTACATTCGGTCAAAAAGGCATGATACTGATAGAAAGCACAAAGAGCTGGAAACAACCGAAATTGGTTATGCGCTGCCCGAGACCGTGGATAATGAGAATATTAGCATACCTGATAACCAAAAGGCTCAGTTCAAAGAAAGGCCTATAGGCTCAGTAGAACATGAAGGAAGGAGAATTATTGAGACATCGGTTTTGAAGCCTAAGGACGGTGGTCGTGTTGCTAAAAGAGAAAGGGACATACGTCAAGGAATTGATTTAGCAACCTCACTGGAACGGATAGAGAAATCCTTTTTTATCACTAACCCAAGACTACCTGATAATCCTATTATATTTGCATCTGATATATTTCTCGACTCCACGGAGTATACACGTGAAGAAGTGATAGGAAGAAACATTGGGTTTCTTGAAGGACCCAAAACAGATCAAGCAACTATCTCAAGGATAAAGGATGCAATTGAAGAGCAGAAAGAAATTACTGTTCAGATAATCAACTATACAAGGAGTGGAAAGAAGTTTCCAAATTTATTCCACCTGCAACCTGTGTGTGGTCAGAAGGGCGAGCTTCAATACTTCATTAGTGTACAACTTGATGTAAAACCTTTGAGCGACCGACTTTCAGAAATAACGGAACATCAAAGTGCTAAGGTGGTCAAAGCTATAGCAGAAAATGTTGACAAGGCTGTCCGCGAACTTCCCGATGCCAACTTGAAACCAAATAATCTGTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTTCTTCCTGGCTAGCAATTCAAAAGATTACAAGTCATGGTGAAAAGGTTGGACTCCATCATTTTAAGCCAATCAAACCACTGGGTTTTGGAGACATTGGCAGCGTTCATTTGGTAGAACTGAAAGGGACAGGTGAATTCTTTGCTATGAAAGCAATAGAGAAGTCGGTGATTTTAAATCGTAACAAGGTTCACCGAGCATGCATCGAAAGGGAAATCATAGCACTTCTGGATCATCCTTTTATGCCAACACTATACTCTTCATTTCAGACGCCTACACACATTTTTCTGATTATAGACTTCTGCCCTGGTGGAGAGTTATTTGCCTTTCTTGACAAGCAGCCCATGAAAATGTTTAAAGAGGAAGTTGCAAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTAGAATACCTTCACTGTTTAGGCATTATCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAGAAGGATGGACATATCGTCCTCACTGATTTTGATTTATCGTTTAAGACATCCGACGTGCAAAACATAGAGTCTCCACCGCCGAAAAAGACGAGATATTGGCATGGACAACCGCCCGTGTTCTTTGTCGAACCTGTTGCAAAATTGAATTCATTCGTTGGAACTGAAGAGTACATTGCTCCTGAGATTATAATGGGAGATGGCCACAGTAGCTCTGTTGACTGGTGGACTCTTGGTATTTTGTTGTATGAGATGCTGTACGGTCGCACTCCCTTCAAAGGAAAGAACAGGAGGAAGACATTTGCCAATATTTTATTCAAGGATTTAACCTTCCCCTTTAGCATTCAGGCAAGTTTTGCAGCAAAGCAACTGATTGATGCACTACTACAGCGAGACCCTACCCGTCGTCTAGGATCAAGTACCGGTGCAGATGAAATCAAGCGACACCCTTTTTTCCATCAAATAGATTGGCCTAAAATCCGAACCATGACCCCACCATCACCAGATGTAGCTCTTCAGTTAATTGAGAGAGATACAAAAGATGGAGGGCTCAGTCATTCAACAGGCAATGATATTTTCTGA | 2655 | 42.41 | TFRTRVRERDRKVDEESETKDPSSYNLSSSAYQISPTEKRTPTEVFQLPVSSRDGHSKDESGATHVQDEAKASLTSSPPAVSIEASRKWMAFESDITKTYAKKFDRIGSSFAELLEANMTERIAEEIKNDVLSSLQLTFVVSDATKPDCPIMFASNGFLVMTGYTSEEVIGRNCRFLQGPESDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTIGPVKDSHGNTIKFVGMQVEIGKNTEEKEKRMRSMSITEVQTEKAIKSIVDVPTARSLRSYIRSKRHDTDRKHKELETTEIGYALPETVDNENISIPDNQKAQFKERPIGSVEHEGRRIIETSVLKPKDGGRVAKRERDIRQGIDLATSLERIEKSFFITNPRLPDNPIIFASDIFLDSTEYTREEVIGRNIGFLEGPKTDQATISRIKDAIEEQKEITVQIINYTRSGKKFPNLFHLQPVCGQKGELQYFISVQLDVKPLSDRLSEITEHQSAKVVKAIAENVDKAVRELPDANLKPNNLWAIYCQPVLPRPHKKYSSSWLAIQKITSHGEKVGLHHFKPIKPLGFGDIGSVHLVELKGTGEFFAMKAIEKSVILNRNKVHRACIEREIIALLDHPFMPTLYSSFQTPTHIFLIIDFCPGGELFAFLDKQPMKMFKEEVARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTSDVQNIESPPPKKTRYWHGQPPVFFVEPVAKLNSFVGTEEYIAPEIIMGDGHSSSVDWWTLGILLYEMLYGRTPFKGKNRRKTFANILFKDLTFPFSIQASFAAKQLIDALLQRDPTRRLGSSTGADEIKRHPFFHQIDWPKIRTMTPPSPDVALQLIERDTKDGGLSHSTGNDIF | 884 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2323977 | 2334823 | + | MC04g0293 | Mch4g0368 | 685080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0368 | 884 | Pfam | Protein kinase domain | 561 | 843 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch4g0368 | 884 | CDD | PAS | 151 | 240 | IPR000014 | - | |
Mch4g0368 | 884 | Gene3D | Phosphorylase Kinase; domain 1 | 556 | 641 | - | - | |
Mch4g0368 | 884 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Mch4g0368 | 884 | SMART | pac_2 | 201 | 243 | IPR001610 | - | |
Mch4g0368 | 884 | SMART | pac_2 | 438 | 480 | IPR001610 | - | |
Mch4g0368 | 884 | ProSiteProfiles | Protein kinase domain profile. | 558 | 843 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch4g0368 | 884 | NCBIfam | PAS domain S-box protein | 388 | 478 | IPR000014 | - | |
Mch4g0368 | 884 | NCBIfam | PAS domain S-box protein | 151 | 248 | IPR000014 | - | |
Mch4g0368 | 884 | ProSiteProfiles | PAS repeat profile. | 124 | 197 | IPR000014 | - | |
Mch4g0368 | 884 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Mch4g0368 | 884 | PANTHER | FLIPPASE KINASE 1-RELATED | 512 | 858 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Mch4g0368 | 884 | ProSiteProfiles | PAC domain profile. | 198 | 252 | IPR000700 | - | |
Mch4g0368 | 884 | SMART | pas_2 | 126 | 195 | IPR000014 | - | |
Mch4g0368 | 884 | SMART | pas_2 | 363 | 432 | IPR000014 | - | |
Mch4g0368 | 884 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 679 | 691 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch4g0368 | 884 | SMART | serkin_6 | 558 | 843 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch4g0368 | 884 | FunFam | Serine/threonine-protein kinase nrc-2 | 642 | 860 | - | - | |
Mch4g0368 | 884 | Gene3D | Transferase(Phosphotransferase) domain 1 | 642 | 857 | - | - | |
Mch4g0368 | 884 | MobiDBLite | consensus disorder prediction | 22 | 50 | - | - | |
Mch4g0368 | 884 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 377 | 477 | IPR035965 | - | |
Mch4g0368 | 884 | CDD | PAS | 384 | 477 | IPR000014 | - | |
Mch4g0368 | 884 | Gene3D | PAS domain | 138 | 300 | - | - | |
Mch4g0368 | 884 | Pfam | PAS domain | 376 | 477 | IPR000014 | - | |
Mch4g0368 | 884 | Pfam | PAS domain | 145 | 240 | IPR000014 | - | |
Mch4g0368 | 884 | ProSiteProfiles | PAC domain profile. | 435 | 489 | IPR000700 | - | |
Mch4g0368 | 884 | CDD | STKc_phototropin_like | 556 | 857 | - | - | |
Mch4g0368 | 884 | Gene3D | PAS domain | 351 | 510 | - | - | |
Mch4g0368 | 884 | SUPERFAMILY | Protein kinase-like (PK-like) | 535 | 865 | IPR011009 | - | |
Mch4g0368 | 884 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 145 | 238 | IPR035965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0963 | Mch-Chr2:6476122 | Mch4g0368 | Mch-Chr4:2323977 | 9.39E-288 | dispersed | |
Mch3g0725 | Mch-Chr3:11538666 | Mch4g0368 | Mch-Chr4:2323977 | 5.22E-97 | dispersed | |
Mch4g0368 | Mch-Chr4:2323977 | Mch8g1468 | Mch-Chr8:10997803 | 2.31E-99 | dispersed | |
Mch2g0126 | Mch-Chr2:950446 | Mch4g0368 | Mch-Chr4:2323977 | 6.33E-74 | transposed | |
Mch5g0666 | Mch-Chr5:4474906 | Mch4g0368 | Mch-Chr4:2323977 | 9.03E-31 | transposed | |
Mch5g2014 | Mch-Chr5:19778079 | Mch4g0368 | Mch-Chr4:2323977 | 1.38E-58 | transposed | |
Mch6g0191 | Mch-Chr6:1276298 | Mch4g0368 | Mch-Chr4:2323977 | 3.21E-62 | transposed | |
Mch9g1833 | Mch-Chr9:20125759 | Mch4g0368 | Mch-Chr4:2323977 | 1.66E-51 | transposed | |
Mch2g0443 | Mch-Chr2:3222422 | Mch4g0368 | Mch-Chr4:2323977 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77313 | PF00069 | Pkinase | 4.60E-62 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0368 | K20715 | - | csv:101213364 | 1318.91 |