Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0379 ATGGTTGCCTTTGTAGCTGTAATAGTCTGCTTGGTTCTTCTGAGAACACCCAACATTTATGTGGCAAACGATGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACTGATGGGTCAATCGTTACAGAAGGGGCTTGTGGTTACGGAGATCTGCATAAGATTAGCTATGGAAAACACAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTATGGTGCTTGCAAGGAAGCCCGACCGTGATTCTAACAGCGACGGACTTCTGTCCTCCCAATTATGGCTTATCCTCTGATTATGGTGGGTGGTGCAATTTTCCCCAAGAACACTTTGAGATGTCAGAGGCAGCGTTTGCTGAAATAGCAGAGAGAAAAGCAGATATTGTGCCAGTTCAATACAGGAGGGTGAGGTGTGACAGGAGTGGTGGATTGAGATTCACAGTCCGTGGCAATTCTCGCTTCTTTCAAGTTCTGATTACCAATGTCGGAATGGACGGTGAATTGGTGGCAGTGAAAGTGAAGGGATCAAGAACAGGATGGATACCACTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAGTTTTGA 756 46.03 MVAFVAVIVCLVLLRTPNIYVANDEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKHSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPQEHFEMSEAAFAEIAERKADIVPVQYRRVRCDRSGGLRFTVRGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2416874 2425969 - MC04g0304 Mch4g0379 685091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Mch4g0379 251 SMART dpbb_1 62 149 IPR007112 -
Mch4g0379 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Mch4g0379 251 PANTHER EXPANSIN-A15 7 251 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 Gene3D - 12 155 IPR036908 -
Mch4g0379 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Mch4g0379 251 Gene3D - 159 251 IPR036749 -
Mch4g0379 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Mch4g0379 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Mch4g0379 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Mch4g0379 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Mch4g0379 251 CDD DPBB_EXPA_N 26 154 - -
Mch4g0379 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0379 Mch-Chr4:2416874 Mch9g1554 Mch-Chr9:17825037 1.45E-92 dispersed
Mch4g0379 Mch-Chr4:2416874 Mch9g1387 Mch-Chr9:16250690 2.66E-93 transposed
Mch4g0379 Mch-Chr4:2416874 Mch2g0893 Mch-Chr2:6077979 2.62E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0379 - - - 0.0