Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0391 ATGGTTTGGCTCCTTTTATTACTCCTCTATGTTCAAGGGATTGCAGAAGGGGCCTCAAAACCTGATGTAGTGAACGTTGGAGCTATACTTTCACTAAGTTCCATCACTGGGAAAGTGTCCAAGATTGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGGAGAAAGCTGTCCATATCCATACTTGATTCAAATAACAGTGGATTTCTTGGAATCACAGGAGCAATAAAGTTCATGGCCTCAGACACGGTCGCGATCGTTGGTCCACAAGACGCTACAATGGCACATATACTTTCACATCTTTCAAATGAACTCCATGTTCCATCACTGTCATTTACAGCATTGGACCCAACCCTTTCAACTTTGCAGTATCCATACTTCATTCAAACGGCACCAAATGATCAATTCCAAATGACTGCAATTGCAGACATGATTAGTTATTACGGTTGGCACGACATGGTCGTTGTTTTCACCGATGACGATCTATGCCGAAACGGTATGATCACATTAGGGGATAAACTTGAAGAGAAAGGCTTGAAGATTTCCTTAAAAGTGGCACTTCCCCCTCACCCAGCAGCAACTAGAACTCTAGTCCAAAATGAACTGATGAAGATCAAAATGATGGAATCTCGAGTAATCGTATTATACACGTTTACGAAAACAGGTTTCGTGGTTTTTGAAGTGGCCCAAAGCCTTGGAATGATGGAAACTGGATATGTTTGGATAGCTTCTACTTTGCTGTCAACAGTTATAGATACTCTTTCACCACTTCCTTCAGAAACTTTCAACTCCATCCAAGGAGTCCTTACGCTTCGTCTGCACACGCCCGACTCGAAAAAGAAGCAGTCTTTTATATCTAGTTGGAACAAGCTGAGTAATGGCTCAATTGGGTTGAATATTTATGGATTATATGCTTATGATACTGTTTGGATGATTGCAAGAGGAGTAAAAGAGTTACTTGATCAAAATGGCACCATCTCATTCTCCAAAGATACACATATTAGTAACGTCAAAGGAGAGAGCTTGGATTTTAGTTCACTAGGCATCTTTAATGAAGGAAAGCAGCTGCTTTACAATTTATTGAATATCAGCATGACTGGTCTAACAGGGCCTATTCAATTTGTAGATAGATCCCCTTTACATCCTTCATATGAAATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGATACTGGTCAAGTTACTCCGGGTTATCGGTCGTGCCACCTGAAACATTGTATGACAAGCCAGCCAACCGTTCTACGTCGACCCAAGAGCTAAGCAGCACGGTGTGGCCTGGGGGATCGACGATAAAGCCTCGTGGCTGGGTTATTCCGCTCGATGGAAGGCGGTTAAGAATTGGTGTTCCGCGTAGAGTTAGTTATCAGAACTTTGTGACTCCAGGAAATGGTAATGACACGGTCAAAGGATACTGCATTGATGTGTTCAATGCTGCCATCAAATTGCTTCCATATGCTGTAAATTACGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGTTACTTTGAGCTTGTAAATAAAGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTACTCGGACAAAGATCGTTGATTTTACGCAGCCTTATATTGACTCGGGGCTAGTAGTTCTAGCCCCGGTCAAGAAAATTAACTTCAGTCCTTTGGCATTCCTTCGCCCGTTCTCCCCGATGATGTGGATTGTCACAGCACTCTTTTTCCTCCTCATAGGATTAGTTGTGTGGATTCTGGAACGTCGAAAAAACGACGAGTTTCGAGGACATCCTAGGACACAATTTGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAGAATGTCGTGAGCACGCTCGGTCGTTTCGTGCTTCTCGTGTGGCTTTTCGTGGTTCTAATAATCAACTCGAGCTACACCGCTAGTCTGACGTCGATATTCACAGTACAACAGCTAGCCTCACCTATCACAGGAATTGATTCATTGATAACTAGCAATGAACCTATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTACTTAAGTGAGCAACTTAACATCCAAAAATCTCGGCTCATTGCCCTCAGATCCCCGGAAGAGTATGCTGCTGCCCTCGGGAACAGAACGGTTGTGGCTATTGTCGATGAACAGCCATACATCGATCTCTTTCTCACCGAGTATTGCGATTTTTCGATAAGAGGCCAACCGTTCACAAAAAGTGGATGGGGATTTGTAAGCATTTCCCCGAGACTCCCATTGGCGGCCGACTTGTCGACTGCCATACTCGCTCTCTCCGAGAACGGCAGTCTTCAGAAGATTCACGACGAGTGGTTCTCCAGAAAGTCTTGCAGTTCTGGAGATTCCGATTTGGAACAACTTCACTTGCAAAGCTTCATTGGATTATTCGTCATTTGCGCCGCCGTATGTATACTCGCTCTCTTGTTTCACTTTTGCTTCACGATGTGCCAATTCAATCGCCATTTGAAACGAGGAGATCAAGATGATGATGCTTCAGCCGGTGGCGGTTGTCTGCGTCAATTTTTGTCGTTTGCCGATCAAAGGAAAGATCTAAAGACGAGCAGTTCGAAGAGGAAACGCGAGAATTCGTTCTCCAGCAAACGTGGAGAGGAT 2685 43.43 MVWLLLLLLYVQGIAEGASKPDVVNVGAILSLSSITGKVSKIAIEAAEKDVNSDPSVLGGRKLSISILDSNNSGFLGITGAIKFMASDTVAIVGPQDATMAHILSHLSNELHVPSLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMISYYGWHDMVVVFTDDDLCRNGMITLGDKLEEKGLKISLKVALPPHPAATRTLVQNELMKIKMMESRVIVLYTFTKTGFVVFEVAQSLGMMETGYVWIASTLLSTVIDTLSPLPSETFNSIQGVLTLRLHTPDSKKKQSFISSWNKLSNGSIGLNIYGLYAYDTVWMIARGVKELLDQNGTISFSKDTHISNVKGESLDFSSLGIFNEGKQLLYNLLNISMTGLTGPIQFVDRSPLHPSYEILNVVKSGMKRIGYWSSYSGLSVVPPETLYDKPANRSTSTQELSSTVWPGGSTIKPRGWVIPLDGRRLRIGVPRRVSYQNFVTPGNGNDTVKGYCIDVFNAAIKLLPYAVNYEFILFGDGEKNPSYFELVNKVALKEFDAAVGDIAIVTTRTKIVDFTQPYIDSGLVVLAPVKKINFSPLAFLRPFSPMMWIVTALFFLLIGLVVWILERRKNDEFRGHPRTQFVTILWFGFSTMFFAQRENVVSTLGRFVLLVWLFVVLIINSSYTASLTSIFTVQQLASPITGIDSLITSNEPIGFQVGSFAESYLSEQLNIQKSRLIALRSPEEYAAALGNRTVVAIVDEQPYIDLFLTEYCDFSIRGQPFTKSGWGFVSISPRLPLAADLSTAILALSENGSLQKIHDEWFSRKSCSSGDSDLEQLHLQSFIGLFVICAAVCILALLFHFCFTMCQFNRHLKRGDQDDDASAGGGCLRQFLSFADQRKDLKTSSSKRKRENSFSSKRGED 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2484916 2490644 - MC04g0316 Mch4g0391 685103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0391 895 CDD PBP1_GABAb_receptor_plant 25 416 IPR044440 -
Mch4g0391 895 FunFam Glutamate receptor 454 569 - -
Mch4g0391 895 Gene3D - 452 568 - -
Mch4g0391 895 FunFam Glutamate receptor 570 700 - -
Mch4g0391 895 PIRSF IGluLR_plant 1 895 IPR017103 -
Mch4g0391 895 SMART GluR_14 460 798 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch4g0391 895 FunFam Glutamate receptor 139 299 - -
Mch4g0391 895 CDD GluR_Plant 457 796 - -
Mch4g0391 895 Pfam Ligand-gated ion channel 580 826 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch4g0391 895 Pfam Ligated ion channel L-glutamate- and glycine-binding site 477 563 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch4g0391 895 Gene3D - 731 803 - -
Mch4g0391 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 882 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch4g0391 895 SUPERFAMILY Periplasmic binding protein-like I 18 451 IPR028082 -
Mch4g0391 895 Gene3D - 569 709 - -
Mch4g0391 895 Gene3D - 42 387 - -
Mch4g0391 895 SUPERFAMILY Periplasmic binding protein-like II 436 798 - -
Mch4g0391 895 MobiDBLite consensus disorder prediction 874 895 - -
Mch4g0391 895 Pfam Receptor family ligand binding region 41 397 IPR001828 -
Mch4g0391 895 Gene3D - 139 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0636 Mch-Chr2:4344135 Mch4g0391 Mch-Chr4:2484916 4.82E-291 dispersed
Mch4g0236 Mch-Chr4:1521252 Mch4g0391 Mch-Chr4:2484916 3.35E-261 dispersed
Mch4g0391 Mch-Chr4:2484916 Mch8g0526 Mch-Chr8:3741423 3.91E-134 dispersed
Mch11g0043 Mch-Chr11:274252 Mch4g0391 Mch-Chr4:2484916 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0391 K05387 - csv:101208602 1350.5