Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0405 GCAGATATTCACTCCGCCGCCATTGCCAGTAGCACTACTTCACTCGACCTCGCTTTTCCGTTTCAACTACGAATGGCGGAACTCACTTCCGTGTTTCCTTCTTCTCCTTCGACTTTCGACACCATCACGGCCTCCAAGCGCCGCCAGAATCCGCGGAAGAAGCGGTCCGGAATCGACAACGGCGGAGTTACCGGCAGCGGCGTTTCGAAGCCTAAGTATAGCAAGAAGCCGCCCGATCCTCGGTCGCCGAAGATCACTCCTCCCTGCACCGAATGCGGAAAGAATTTTTGGTCGGATAAAGCGCTTTTCGGACACATGAGGTGCCATCCGGAACGTCAATGGCGGGGTATTAATCCGCCGATTAATTTCGTCCGTCGCCCGATTTCGATTTCTCCTCGTCGTAGCCCTACCGCCGGTTTGGAAGCTGCAATCACCGAAGAGGAACAGGACATCGCCGATTGCTTGATAATGCTGGCCAATAGCCCTAATATTGCGATCGATAAAATCCCCGAATTAGACGGCGTTGGTACGACATGTCGTTTCGAATGCTCGAGTTGCAAGAAAGTGTTCGGGTCGCACCAGGCGCTTGGGGGGCACAGGGCAAGCCACAAGAACGTGAAAGGTTGTTTCGCCATCGCAAGGGGCGATGAAGAAACAGAGGAAAATCAGTTTCAGAGCGCTGCTCTGTATGGCCATGAGAGGAATTCCAATCTGGAGGATAGAATGTCGATGTTTTTTGGAAAAGGGCACAAGTGCAGTATATGTATGAGGGTTTTTGCCAGTGGTCAAGCTCTTGGTGGGCACAAGAGGTGCCATTGGGAGAGAGTGGAGGAGAATACAGCAACAGAGGGTTGTGCTAATTTGGACTTGAATTTGCCTCCTGCCCCTGTTGAAGATGACTCCTCTTCTTCCTATTCTTCAGGCCTCACTCTGGATCTCAGGTTGGGCCTT 951 52.26 ADIHSAAIASSTTSLDLAFPFQLRMAELTSVFPSSPSTFDTITASKRRQNPRKKRSGIDNGGVTGSGVSKPKYSKKPPDPRSPKITPPCTECGKNFWSDKALFGHMRCHPERQWRGINPPINFVRRPISISPRRSPTAGLEAAITEEEQDIADCLIMLANSPNIAIDKIPELDGVGTTCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAIARGDEETEENQFQSAALYGHERNSNLEDRMSMFFGKGHKCSICMRVFASGQALGGHKRCHWERVEENTATEGCANLDLNLPPAPVEDDSSSSYSSGLTLDLRLGL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2590904 2591854 - MC04g0328 Mch4g0405 685117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0405 317 MobiDBLite consensus disorder prediction 35 88 - -
Mch4g0405 317 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Mch4g0405 317 Pfam C2H2-type zinc finger 180 204 IPR013087 -
Mch4g0405 317 Pfam C2H2-type zinc finger 89 111 IPR013087 -
Mch4g0405 317 Pfam C2H2-type zinc finger 250 274 IPR013087 -
Mch4g0405 317 Gene3D Classic Zinc Finger 178 272 - -
Mch4g0405 317 SUPERFAMILY beta-beta-alpha zinc fingers 88 203 IPR036236 -
Mch4g0405 317 MobiDBLite consensus disorder prediction 296 317 - -
Mch4g0405 317 SMART c2h2final6 250 272 IPR013087 -
Mch4g0405 317 SMART c2h2final6 87 109 IPR013087 -
Mch4g0405 317 SMART c2h2final6 181 203 IPR013087 -
Mch4g0405 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 272 IPR013087 -
Mch4g0405 317 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Mch4g0405 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Mch4g0405 317 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Mch4g0405 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Mch4g0405 317 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 38 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0357 Mch-Chr11:2192559 Mch4g0405 Mch-Chr4:2590904 1.67E-17 dispersed
Mch1g1648 Mch-Chr1:17400198 Mch4g0405 Mch-Chr4:2590904 2.47E-09 dispersed
Mch3g1708 Mch-Chr3:18654251 Mch4g0405 Mch-Chr4:2590904 3.92E-18 dispersed
Mch4g0405 Mch-Chr4:2590904 Mch5g0026 Mch-Chr5:230342 2.94E-25 dispersed
Mch2g0426 Mch-Chr2:3114549 Mch4g0405 Mch-Chr4:2590904 1.64E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43148 PF13912 zf-C2H2_6 1.00E-10 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0405 - - - 0.0