Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0428 | ATGCCTTTCTTTCCTCTCCCCCTTCTCTTCCTCTCTCTCATCTCCGCCGCCGCCGCCTGCGACCGCTGCGTTCATCAGGCCAAGGCCGCCTTCTACCAGGACGAAGCCGCCGGTTCATATAGAGGCGCCTGTGGCTATGGCGACCTCACATTGGAGCTCTCCAACGGCTACTACTCCGCCGCCATGCCTCCCCTCTACAAGTCCGGCGCCGGCTGCGGCGCCTGCTTCCAAATTAGGTGCAAGAACGAGAAAATTTGCAGGAGAGAAGGGACCAAAGTGGTGGTGACGGATCGGAATGACAACACTTACACAGGCTTTGTTCTGAGCCAGAAGGGCTTTGCAGAAATGGCTGTGGATGGGAAGGATGGATTGCTTCTGAGTTATGGAGTTGTGGATGTTGAATTTAAGAGGATTCCTTGTGAATATCAGAACAAAAACTTGTTGGTTAGAGTTGAAGAGTTTAGTCAATATCCCTACTATTTAGCCATCAAGCTTCTCTATCAAGGTGGCCAAACAGAAATAGTAGCCGTCGACATAGCTCAGGTCGGATCGTCGGATTGGGATTATATGAGTAGGAATTATGGAGCTGTGTGGGATACCAAAAAGCCTCTATCTAAAGGACCATTGCAGCTGCGATTTGTGGTGACTTCTGGATACGATGGAAAGTGGATTTGGGCAAAATATGTGCTTCCTGCTGATTGGAGAATTGGACTGATTTACAACACTGGAGTTCAAATTAATGACATTGCCAAAGAAGGTTGTCCATCGGAGCAGTGTGGCGATGGACAATGGAAGAAGAGACGATAA | 807 | 49.19 | MPFFPLPLLFLSLISAAAACDRCVHQAKAAFYQDEAAGSYRGACGYGDLTLELSNGYYSAAMPPLYKSGAGCGACFQIRCKNEKICRREGTKVVVTDRNDNTYTGFVLSQKGFAEMAVDGKDGLLLSYGVVDVEFKRIPCEYQNKNLLVRVEEFSQYPYYLAIKLLYQGGQTEIVAVDIAQVGSSDWDYMSRNYGAVWDTKKPLSKGPLQLRFVVTSGYDGKWIWAKYVLPADWRIGLIYNTGVQINDIAKEGCPSEQCGDGQWKKRR | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2726838 | 2728856 | - | MC04g_new0080 | Mch4g0428 | 685140 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0428 | 268 | PRINTS | Expansin/Lol pI family signature | 62 | 80 | IPR007118 | GO:0005576(InterPro) | |
| Mch4g0428 | 268 | PRINTS | Expansin/Lol pI family signature | 187 | 201 | IPR007118 | GO:0005576(InterPro) | |
| Mch4g0428 | 268 | PRINTS | Expansin/Lol pI family signature | 228 | 242 | IPR007118 | GO:0005576(InterPro) | |
| Mch4g0428 | 268 | PRINTS | Expansin/Lol pI family signature | 40 | 58 | IPR007118 | GO:0005576(InterPro) | |
| Mch4g0428 | 268 | PRINTS | Expansin/Lol pI family signature | 128 | 144 | IPR007118 | GO:0005576(InterPro) | |
| Mch4g0428 | 268 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 159 | 242 | IPR007117 | - | |
| Mch4g0428 | 268 | Gene3D | - | 12 | 141 | IPR036908 | - | |
| Mch4g0428 | 268 | SUPERFAMILY | PHL pollen allergen | 145 | 241 | IPR036749 | - | |
| Mch4g0428 | 268 | PANTHER | EXPANSIN-B3 | 10 | 248 | - | GO:0009505(PANTHER)|GO:0009506(PANTHER) | |
| Mch4g0428 | 268 | Pfam | Lytic transglycolase | 60 | 134 | IPR009009 | - | |
| Mch4g0428 | 268 | Pfam | Expansin C-terminal domain | 149 | 231 | IPR007117 | - | |
| Mch4g0428 | 268 | Gene3D | - | 142 | 247 | IPR036749 | - | |
| Mch4g0428 | 268 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 41 | 145 | IPR007112 | - | |
| Mch4g0428 | 268 | SUPERFAMILY | Barwin-like endoglucanases | 9 | 143 | IPR036908 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0428 | Mch-Chr4:2726838 | Mch4g0432 | Mch-Chr4:2755437 | 3.01E-114 | dispersed | |
| Mch4g0428 | Mch-Chr4:2726838 | Mch4g0429 | Mch-Chr4:2733037 | 1.36E-118 | tandem |
Pathway information