Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0430 ATGTGGCATTGGAAATGTCCCAAGGCCATTTTGCAGCTGCTGTGCCTTCCCTTTATAAACAAGGAGCAGCTTGTGGTGCTTGCTATCAGGATACCATGTGATTACAAAAATAAAAATTTGTTGGTGCAAGTGGTAGAATGGAGCCACAAGCCATACTACTTAGCCATCAAATTCCTATATCAAGGTGGCCAAACAGACATACAAGCAGTTAACGTAGCTCAGGTTGGTGTTCCAAAATGGCGGCCTATGAAAAGAAATTATGGAGCAATTTGGGATACCAATAATGTGCCTGAAGGAGCTTTACAGCTGAGAATGGTGGTAACCTCAAGATACGACAATGGAAAGTGGATTTGGGCAAGTTATGTGCTCCCTGCTGATTGGAAAAATGGAGAGATTTATGACACTGGAATTAAAATCAAAGATATTGCAATTGAGAATTGCCCTCCTTGGCAATGTGATGGGGGAGCATGTGGTTATGGCAACCTAGCATTGGAGTTATCCAATGGATTTTTTGCAGCTGCTGTGCCTTCCCTTTATAAACAAGGAGCTGGATGTGGTGCCTGCTACCAAGTAAGGTGCAAAAATAGAAGGTTCTGCAATAGAGCAGGTACCAAAGTGGTACTGACAGATCAAAATAACGACAACGTAACTGATCTTATTCTTAGCAAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAGAGGGTACCTTGTGAATATGCGAGTAGAAGAATCAAGCTATAATCCATTCAAGTTGGCAATAAAATTTCTGTATCAAGGTGGCCAAACAGATATAGTAGCTGTTGACATAGCTCCAATTGGTACCTCTGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGACACAGATAATGTACCTGAAGGTGCACTGCAGCTGAGAATGGTGGTATCTTCAGGATATGATGGAAAATGGGTTTGGGCAAAATCTGTGCTTCCTGCTGATTGGAAAGCTGGGGTGATCTACAACACTGGAGTTCAAATTAATGATATTGCTAAAGAGAGTTGTCCTCCGTGGCAATGTGATGGAGGTGCATGTGGGTATGGAAACTTTGCCTTGGAATTATCCCAAGGCTATTTTGCAGCAGCTGTGCCATCTCTCTACAGACAAGGAATTGGGTGTGGTGCTTGTTATCAGGTAAGATGTAAGAATGAAACATTGTGCAACACAACAGGGACCAAAGTAGTTTTGACAGATCAAAACTACGACAATAGAACAGATTTTGTTCTCAGTAGAAAAGCTTTCTCTGCAATGGCTTTAGATGGCAAAGGCCAAGAACTTCTGAAATCTGGAATTGTTGACATAGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAGTACAAGTGGTGGAATGGAGCCACAAACCATATTATTTGGCCATTAAATTCCTATACCAAGGGGGCCAAACAGACATATTAGCAGTCGACATAGCTCAGGCTGATTCTCAAGATTGGCATTACATGAAAAGAAACTATGGACCTATTTGGGACACCAATGAAGTTCCCGAAGGAGCAATAAAGCTAGTGGTGATTGTAGCTTCGGGATATAGAAATGGGAGGGGAATTATGGCAAGTTATGCACTTCCTGCTGATTGGAAAAATGGAGAGATTTACGATACTGGAATTAAGATCAAGGATATTGCTGGAGAGTATTGCAATCCTTGGCGCTGCGGTGAAGAACCATGGAAATGA 1725 41.57 MWHWKCPKAILQLLCLPFINKEQLVVLAIRIPCDYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNVAQVGVPKWRPMKRNYGAIWDTNNVPEGALQLRMVVTSRYDNGKWIWASYVLPADWKNGEIYDTGIKIKDIAIENCPPWQCDGGACGYGNLALELSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRFCNRAGTKVVLTDQNNDNVTDLILSKRAFFTMALNGRGYLVNMRVEESSYNPFKLAIKFLYQGGQTDIVAVDIAPIGTSDWSHMKRSYGAVWDTDNVPEGALQLRMVVSSGYDGKWVWAKSVLPADWKAGVIYNTGVQINDIAKESCPPWQCDGGACGYGNFALELSQGYFAAAVPSLYRQGIGCGACYQVRCKNETLCNTTGTKVVLTDQNYDNRTDFVLSRKAFSAMALDGKGQELLKSGIVDIEYKRIPCEYNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDILAVDIAQADSQDWHYMKRNYGPIWDTNEVPEGAIKLVVIVASGYRNGRGIMASYALPADWKNGEIYDTGIKIKDIAGEYCNPWRCGEEPWK 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2737509 2745915 - MC04g_new0082 Mch4g0430 685142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0430 574 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 250 332 IPR007117 -
Mch4g0430 574 SUPERFAMILY Barwin-like endoglucanases 147 235 IPR036908 -
Mch4g0430 574 Pfam Lytic transglycolase 173 235 IPR009009 -
Mch4g0430 574 Pfam Lytic transglycolase 370 445 IPR009009 -
Mch4g0430 574 PANTHER EXPANSIN-B3 351 557 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0430 574 SUPERFAMILY PHL pollen allergen 238 331 IPR036749 -
Mch4g0430 574 SUPERFAMILY PHL pollen allergen 461 550 IPR036749 -
Mch4g0430 574 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 468 551 IPR007117 -
Mch4g0430 574 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 52 135 IPR007117 -
Mch4g0430 574 SMART dpbb_1 172 242 IPR007112 -
Mch4g0430 574 SMART dpbb_1 369 445 IPR007112 -
Mch4g0430 574 Gene3D - 452 555 IPR036749 -
Mch4g0430 574 Gene3D - 35 136 IPR036749 -
Mch4g0430 574 Gene3D - 241 333 IPR036749 -
Mch4g0430 574 Pfam Expansin C-terminal domain 49 124 IPR007117 -
Mch4g0430 574 Pfam Expansin C-terminal domain 238 321 IPR007117 -
Mch4g0430 574 Pfam Expansin C-terminal domain 465 526 IPR007117 -
Mch4g0430 574 Gene3D - 137 240 IPR036908 -
Mch4g0430 574 Gene3D - 334 451 IPR036908 -
Mch4g0430 574 SUPERFAMILY Barwin-like endoglucanases 344 454 IPR036908 -
Mch4g0430 574 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 154 261 IPR007112 -
Mch4g0430 574 SUPERFAMILY PHL pollen allergen 45 134 IPR036749 -
Mch4g0430 574 PRINTS Expansin/Lol pI family signature 438 454 IPR007118 GO:0005576(InterPro)
Mch4g0430 574 PRINTS Expansin/Lol pI family signature 537 551 IPR007118 GO:0005576(InterPro)
Mch4g0430 574 PRINTS Expansin/Lol pI family signature 372 390 IPR007118 GO:0005576(InterPro)
Mch4g0430 574 PRINTS Expansin/Lol pI family signature 350 368 IPR007118 GO:0005576(InterPro)
Mch4g0430 574 PRINTS Expansin/Lol pI family signature 496 510 IPR007118 GO:0005576(InterPro)
Mch4g0430 574 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 351 455 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0430 Mch-Chr4:2737509 Mch4g0433 Mch-Chr4:2758872 1.20E-150 dispersed
Mch4g0429 Mch-Chr4:2733037 Mch4g0430 Mch-Chr4:2737509 6.67E-126 tandem
Mch4g0430 Mch-Chr4:2737509 Mch4g0431 Mch-Chr4:2749232 4.93E-56 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0430 - - - 0.0