Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0431 ATGAGTTTGAAAGGAAAAGATCAAGATCTTTTGAATTCTGGAATTGTCGACATAGAATATAAGAGGATACCTTGTGCATACAAGAACAAAAATTTATCAGTACGAGTCGAAGAATCAAGTTATAACCCACAGTATTTAGCCATTAAAGTCTTGTACCAAGGTGGCCAAACAGAGATAGTTGCTGTGGACATAGCTGAGGTAAAATTAAGCCTAAAACCACACATAAAAATGAATAGAACACACAGAGATTATGTTATTTGGCATTGGGTGCAGGTTGGTTCATATGATTGGGTGAGTTTAAAGAGAAACTATGGAGCTGTTTGGGACACTAATAAAGTGCCAAAAGGAGCATTAAAGATGAGAATTGCAGTAACTGCAGGGTACGATGGAAAATGGTTGTGGTCAAATTATGTGCTTCCTGCTGATTGGAAAAACGGAATGATTTATGATACAAGACTTCAAATTGATGATATTGCCAAAGAGAGTTGTCCTCCATCGCAATGCGGCGATGCACCATGGAAATGA 525 37.71 MSLKGKDQDLLNSGIVDIEYKRIPCAYKNKNLSVRVEESSYNPQYLAIKVLYQGGQTEIVAVDIAEVKLSLKPHIKMNRTHRDYVIWHWVQVGSYDWVSLKRNYGAVWDTNKVPKGALKMRIAVTAGYDGKWLWSNYVLPADWKNGMIYDTRLQIDDIAKESCPPSQCGDAPWK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2749232 2750717 - MC04g_new0083 Mch4g0431 685143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0431 174 PRINTS Major pollen allergen Lol pI signature 2 17 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0431 174 PRINTS Major pollen allergen Lol pI signature 51 66 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0431 174 PRINTS Major pollen allergen Lol pI signature 35 50 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0431 174 PANTHER EXPANSIN-B3 4 157 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0431 174 SUPERFAMILY PHL pollen allergen 30 151 IPR036749 -
Mch4g0431 174 Gene3D - 27 155 IPR036749 -
Mch4g0431 174 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 44 151 IPR007117 -
Mch4g0431 174 Pfam Expansin C-terminal domain 33 140 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0431 Mch-Chr4:2749232 Mch4g0436 Mch-Chr4:2783179 3.03E-66 dispersed
Mch4g0430 Mch-Chr4:2737509 Mch4g0431 Mch-Chr4:2749232 4.93E-56 tandem
Mch4g0431 Mch-Chr4:2749232 Mch4g0432 Mch-Chr4:2755437 2.86E-70 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0431 - - - 0.0