Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0432 ATGGCTTGGTTTCTCAGCTTCTTGTTTCTCTTTCTCGTCTCTTTTGCTGCTGCTTGTGACCGTTGTATTCATCAATCCAAGGCTACTCATAACGATGCACCTACTTCAGACGGAGGAGCATGTGGTTATGGCAACTTGACATTTGAATTTTCCAATGGCTACTCTGCCGCTGCTGGGCCTAATCTCTACAAACAAGGAGCTGGCTGTGGTGCCTGCTATCGAGTAAGATGTAAGAGCAAAAACTTGTGCAATACAGCAGGGACCAAAATAGTTTTGACAGATCAAAACTTCGATAAGAGAACGGATTTTGTCCTCAGTACAAAAGCTTTCTCTGCAATGGCTTTACAGCGAAAGGAACAAGAACTTATGACTTCTGGAATCGTTGATGTAGAATACAAAAGGGTACCTTGTGTACACAAAGACAAAAGTTTAGCTGTGCGAGTGGAAGAAACAAGCTCTAACCCAAACTATTTAGCCATCAAATTTTTGTATCAAGGGGGCCGGACAGAAATAGTAGCTGTTAATGTAGCTGGAGTCGGTTCAAATGATTGGGTAAACTTAAGTAGAAATTTTGGAGCTGTTTGGGATACTAGAAGAGTGCCCAAAGGAGCATTGCAGATGAAAATGGTGGTAACTTCAGGGTACGATGGAAAGCCAGTGTGGATAAAATCTGTTCTTCCTGCTAACTGGAAAGCTGGAATCATTTACGATACTGGAGTTCAAATTAATGATATTGCCAAAGAAAATTGCCCTGAATCGGAATGTGGCGATGCACCATGGGAATGA 786 42.11 MAWFLSFLFLFLVSFAAACDRCIHQSKATHNDAPTSDGGACGYGNLTFEFSNGYSAAAGPNLYKQGAGCGACYRVRCKSKNLCNTAGTKIVLTDQNFDKRTDFVLSTKAFSAMALQRKEQELMTSGIVDVEYKRVPCVHKDKSLAVRVEETSSNPNYLAIKFLYQGGRTEIVAVNVAGVGSNDWVNLSRNFGAVWDTRRVPKGALQMKMVVTSGYDGKPVWIKSVLPANWKAGIIYDTGVQINDIAKENCPESECGDAPWE 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2755437 2757145 - MC04g_new0084 Mch4g0432 685144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0432 261 SMART dpbb_1 55 132 IPR007112 -
Mch4g0432 261 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0432 261 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0432 261 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0432 261 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0432 261 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch4g0432 261 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576(InterPro)
Mch4g0432 261 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Mch4g0432 261 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576(InterPro)
Mch4g0432 261 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576(InterPro)
Mch4g0432 261 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Mch4g0432 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Mch4g0432 261 Pfam Expansin C-terminal domain 146 227 IPR007117 -
Mch4g0432 261 PANTHER EXPANSIN-B3 7 244 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0432 261 Gene3D - 13 137 IPR036908 -
Mch4g0432 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Mch4g0432 261 Pfam Lytic transglycolase 56 132 IPR009009 -
Mch4g0432 261 SUPERFAMILY PHL pollen allergen 143 237 IPR036749 -
Mch4g0432 261 Gene3D - 138 243 IPR036749 -
Mch4g0432 261 SUPERFAMILY Barwin-like endoglucanases 9 138 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0162 Mch-Chr4:1101870 Mch4g0432 Mch-Chr4:2755437 2.62E-32 dispersed
Mch4g0428 Mch-Chr4:2726838 Mch4g0432 Mch-Chr4:2755437 3.01E-114 dispersed
Mch4g0429 Mch-Chr4:2733037 Mch4g0432 Mch-Chr4:2755437 3.80E-118 dispersed
Mch4g0432 Mch-Chr4:2755437 Mch4g0436 Mch-Chr4:2783179 9.57E-112 dispersed
Mch4g0431 Mch-Chr4:2749232 Mch4g0432 Mch-Chr4:2755437 2.86E-70 tandem
Mch4g0432 Mch-Chr4:2755437 Mch4g0433 Mch-Chr4:2758872 2.36E-75 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0432 - - - 0.0