Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0434 ATGGGTCTCTCTCTTGGCGTTCTCTTCTTCTTCATCATCTCTTCTGCCACTGCTTGTGATCGTTGCGTTCGTCAATCCAAGGCTGCTTATTACTATGATGATACATTATCCATTCATCAAGGGGCATGTGGGTATGGCTCCTTGGCGTTAGAATTGTCCAATGGGTATGTCGCAAGTGCTGTCTCAACTCTTTATAAAGAAGGAGCTGGATGTGGTGCCTGTTTTCAGGTAAGGTGCAAGGATAGAAGATTGTGCACCACTGCAGGGACTAAAGTGGTTGTGACAGATCAAACTAGCAATAACAAACATGACTTTATCCTCAGTAAGAAAGCATACTCCGCAATGGCTTTGCAAAATAAGCGAAAAGAACTTTTGAATCTAAGATTAGTTGATGTCGAGTATAAAAGGATACCTTGTACCTACCGAAACAAGAATTTGTCGGTACGAGTGGAGGAATGGAGCCAAAAGCCAAACTACTTGGCCATAAAATTCCTTTACCAAGGCGGCCAAACAGAAATAAAAGCAGTTGAAATAGCTGAGGTTGGTTCCTCAAATTGGGAACCCATGCAGAGAAACTACGGTGCTATTTGGCACACGACCAAAGTAATTGAAGGAGGATTTCAGTTGATGATAATGGTAGCTTCAGGATACAATAATGAGAACACGTATTTTACAAATTATGAACTCCCTAATGATTGGAAAAATGGAGAGATCTATGATACTGGAATTCAATTTGATGACATTGCCAAGGAAATTTGCCTGCCAAACAAGTGTGGCGATAGGCCATGGAAATAA 795 41.26 MGLSLGVLFFFIISSATACDRCVRQSKAAYYYDDTLSIHQGACGYGSLALELSNGYVASAVSTLYKEGAGCGACFQVRCKDRRLCTTAGTKVVVTDQTSNNKHDFILSKKAYSAMALQNKRKELLNLRLVDVEYKRIPCTYRNKNLSVRVEEWSQKPNYLAIKFLYQGGQTEIKAVEIAEVGSSNWEPMQRNYGAIWHTTKVIEGGFQLMIMVASGYNNENTYFTNYELPNDWKNGEIYDTGIQFDDIAKEICLPNKCGDRPWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2776006 2777441 - MC04g_new0086 Mch4g0434 685146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0434 264 Gene3D - 12 140 IPR036908 -
Mch4g0434 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Mch4g0434 264 Pfam Lytic transglycolase 60 120 IPR009009 -
Mch4g0434 264 CDD DPBB_EXLA_N 14 141 - -
Mch4g0434 264 Gene3D - 141 246 IPR036749 -
Mch4g0434 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Mch4g0434 264 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Mch4g0434 264 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Mch4g0434 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Mch4g0434 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Mch4g0434 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Mch4g0434 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Mch4g0434 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Mch4g0434 264 PANTHER EXPANSIN-B3 11 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0434 264 Pfam Expansin C-terminal domain 149 216 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0434 Mch-Chr4:2776006 Mch4g0436 Mch-Chr4:2783179 1.40E-126 dispersed
Mch4g0433 Mch-Chr4:2758872 Mch4g0434 Mch-Chr4:2776006 1.34E-72 tandem
Mch4g0434 Mch-Chr4:2776006 Mch4g0435 Mch-Chr4:2779091 4.28E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0434 - - - 0.0