Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0435 ATGGGTCTCTTACTTGGCTTTTTCTTCTTCTTCCTTGTCTCTTCTGCCACTGCTTGTGATCGTTGTGTTCGTCAATCCAAGGCTGCTTATTACTACGACGATACACCTATTCAACATGGGGCATGTGGGTATGGCTCCTTGGCATCACAATTATCCAATGGGTATGTTGCAGCTGTTGTGCCTGCCCTTTATAAACAAGGAGCTGGATGTGGTGCCTGTTTTCAGGTAAGGTGCAAGAACAGAAGATTCTGCACCGCCGCAGGGACTAAAGTGGTTGTGACAGATCAAAATAACGACAACAAATATGACTTTGTCCTCAGTAAGAAAGCATACTCAGCAATGGCATTGCAAAATAAGGGCAAAGAACTTTTGAATCTAGGAACAGTTGATGTGGAGTATAAGAGGATACCTTGTACCTATCCAAACAAGAATCTGTTAGTACGAGTGGAAGAATGGAGCCAAAAGCCATACTACTTAGCCATTAAATTCCTCTACCAAGGTGGGCAGACAGAAATAAAAGCAGTTGAAATAGCAGAGGTTGGTTCCTCAGATTTTGAACCCATGAAGAGAAACTACGGTGCTATCTGGGATACAAACAAAGTAATTGAAGGAGCCTTCCAATTGAAGATAGTGGTGGCTTCAGGATACAATAATGAAAACACATATTTTACAAATTACGACCTTCCTTATGATTGGAAAAATGGAGAGATCTATGATACTGGAATTCAAATCTATGACATTGCCAAAGAAGCTTGCCCGCCAAACAAGTGTGGCGATAGGCCATGGAAATAA 792 41.67 MGLLLGFFFFFLVSSATACDRCVRQSKAAYYYDDTPIQHGACGYGSLASQLSNGYVAAVVPALYKQGAGCGACFQVRCKNRRFCTAAGTKVVVTDQNNDNKYDFVLSKKAYSAMALQNKGKELLNLGTVDVEYKRIPCTYPNKNLLVRVEEWSQKPYYLAIKFLYQGGQTEIKAVEIAEVGSSDFEPMKRNYGAIWDTNKVIEGAFQLKIVVASGYNNENTYFTNYDLPYDWKNGEIYDTGIQIYDIAKEACPPNKCGDRPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2779091 2780906 - MC04g_new0087 Mch4g0435 685147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0435 263 PANTHER EXPANSIN-B3 9 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0435 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
Mch4g0435 263 SMART dpbb_1 56 133 IPR007112 -
Mch4g0435 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Mch4g0435 263 Gene3D - 12 139 IPR036908 -
Mch4g0435 263 Pfam Lytic transglycolase 57 132 IPR009009 -
Mch4g0435 263 Pfam Expansin C-terminal domain 153 215 IPR007117 -
Mch4g0435 263 CDD DPBB_EXLA_N 14 140 - -
Mch4g0435 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Mch4g0435 263 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Mch4g0435 263 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Mch4g0435 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Mch4g0435 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Mch4g0435 263 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Mch4g0435 263 Gene3D - 140 245 IPR036749 -
Mch4g0435 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0435 Mch-Chr4:2779091 Mch4g0437 Mch-Chr4:2785707 1.48E-89 dispersed
Mch4g0434 Mch-Chr4:2776006 Mch4g0435 Mch-Chr4:2779091 4.28E-160 tandem
Mch4g0435 Mch-Chr4:2779091 Mch4g0436 Mch-Chr4:2783179 8.42E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0435 - - - 0.0