Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0436 GTTTTTTCTTGTAAAAAACCTATGTCCTTTCTTTGTCACCCGCTTCATAAAAATCCATCGATTTTGCCTTATGGGAACTGCCAAATCTCTTTCTTTACACCCATTTTTATGCACCCTATAAAAGGTCTTCACCCTTCTTGCTTGTTTCTTCACAAAATGGATTCATTTCTTGCCTTCATTGGTTTCCTTGTTCTTGTCTCTTTTGTTACTGCTTGTGATCGATGTGTTCATCAATCCAAAGCTGCTTATTACTACAGCGATGCACCTATTCAATATGGTGCATGTGGCTATGGTTCCTTGGCAACTGAGTCCTTCAATGGATACGTTGCTGGTGGTGTGCCTTCCCTTTACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAGGTGAGGTGCAAGAACAAAAAGCTTTGCAGTCCAATAGGAGCTAAAGTAACTTTGACTGATCAAAACTACGATAATCGAACAGATTTTGTTCTCAGTAGGAGAGCTTTCTCTGAAATGGCTCGATGGGGTATGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATCGAATACAAGAGAGTACCATGTGTATACAAAAACAAAAATTTGTTCATGCGAGTAGAAGAATGGAGCAACAGGCCATACTACTTGGCCATGAAATTCCTCTACCAAGGCGGCCAAACAGAAATAAAAGCAATTGATATTGCACAAGTTGGTTCCTCGGATTGGGAACCACTGAAAAGAAACTATGGAGCTATTTGGGACACAAATAGAGTTCCTGAAGGAGCACTGCAACTAAGAATAGTGGTGGCTTCAGGATACAATAATGAGAATTGGATTTGGACGAATTATGAGCTTCCTGCCGATTGGAAAAATGGAGAGACTTACGATACTGGAATTCAAATTGAAGATATTGCCAAAGAAGTTTGCCCTCTAAAGGAATGTGGCGATAGACTATGGAAA 948 40.4 VFSCKKPMSFLCHPLHKNPSILPYGNCQISFFTPIFMHPIKGLHPSCLFLHKMDSFLAFIGFLVLVSFVTACDRCVHQSKAAYYYSDAPIQYGACGYGSLATESFNGYVAGGVPSLYKQGAGCGACFQVRCKNKKLCSPIGAKVTLTDQNYDNRTDFVLSRRAFSEMARWGMAQDLLKLGMVDIEYKRVPCVYKNKNLFMRVEEWSNRPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEPLKRNYGAIWDTNRVPEGALQLRIVVASGYNNENWIWTNYELPADWKNGETYDTGIQIEDIAKEVCPLKECGDRLWK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2783179 2785152 - MC04g0349 Mch4g0436 685148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0436 316 SUPERFAMILY PHL pollen allergen 196 292 IPR036749 -
Mch4g0436 316 Gene3D - 193 297 IPR036749 -
Mch4g0436 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 210 293 IPR007117 -
Mch4g0436 316 CDD DPBB_EXLA_N 67 193 - -
Mch4g0436 316 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576(InterPro)
Mch4g0436 316 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576(InterPro)
Mch4g0436 316 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576(InterPro)
Mch4g0436 316 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Mch4g0436 316 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576(InterPro)
Mch4g0436 316 Pfam Expansin C-terminal domain 202 268 IPR007117 -
Mch4g0436 316 SUPERFAMILY Barwin-like endoglucanases 63 194 IPR036908 -
Mch4g0436 316 Pfam Lytic transglycolase 110 186 IPR009009 -
Mch4g0436 316 PANTHER EXPANSIN-B3 60 299 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Mch4g0436 316 Gene3D - 67 191 IPR036908 -
Mch4g0436 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 196 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0431 Mch-Chr4:2749232 Mch4g0436 Mch-Chr4:2783179 3.03E-66 dispersed
Mch4g0432 Mch-Chr4:2755437 Mch4g0436 Mch-Chr4:2783179 9.57E-112 dispersed
Mch4g0433 Mch-Chr4:2758872 Mch4g0436 Mch-Chr4:2783179 4.08E-79 dispersed
Mch4g0434 Mch-Chr4:2776006 Mch4g0436 Mch-Chr4:2783179 1.40E-126 dispersed
Mch4g0436 Mch-Chr4:2783179 Mch6g2139 Mch-Chr6:23785298 5.91E-59 dispersed
Mch4g0435 Mch-Chr4:2779091 Mch4g0436 Mch-Chr4:2783179 8.42E-142 tandem
Mch4g0436 Mch-Chr4:2783179 Mch4g0437 Mch-Chr4:2785707 6.19E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0436 - - - 0.0