Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0437 ATGGGTTTGTTTTTGTGGCTTCTCTTCTTCTTTCTGGCCTCTTCTGCCTCTGCCTGTGATCGCTGTGTTCACCAATCCAAGGCTGCCTATTTCTCTACCCATTATCCACTTTCATCTGGGGCTTGTGGCTATGGCTCCTTGGCTCTTGGTTTCCTCGACGGGCACCTCGCCGCCGGTGTCCCTTCCCTCTATAAGGAGGGAGTTCGTTGCGGCGCATGCTATCAGGTAAGGTGTAAAGACAAGAAAGTTTGCAGCAGGGGTGGCACAAAAGTAATTTTGACTGATCTGAATCTACACAGCAATACCACTGATTTTGTTTTGAGTAAGAAAGCTTTCTCTGCCATGGCTCTCAAGCCCAGAGATAAGAATATTTTGAAAACTGGGACTGTGGACGTCGAATACAAGAGGATTCCTTGTGAATACAAAAAACAAAATGTGTCAGTACGAATTGAAGAATCAAGCCAAAAGCCACATCATTTGGCTGTCAAGTTCTTGTTCCAAGGTGGCCAGACTGATATAGTACTAGTTCATCTTCATCCGGTGAATTCAGGGAGAACGAGGTTCATGAACAGAAGGCATGGGACAGCGGTGTGGGAGACAGATGCGGCGGTGGAAGGGGCGGTGGTTTTTCAGTTAAGGGTGATCTCGGGGTTCGACGGGATGTGGGTCAGGGCGGAGCGAGAGATGCCGGCGAATTGGAGGCCGGGGATGATCTACGACCTTGGAATTCAGATCGACGCCATTGCCAAAGGCCAAGAAAGTTGCACACCATGCGACGAAGGCCAATGGTAA 792 49.24 MGLFLWLLFFFLASSASACDRCVHQSKAAYFSTHYPLSSGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQVRCKDKKVCSRGGTKVILTDLNLHSNTTDFVLSKKAFSAMALKPRDKNILKTGTVDVEYKRIPCEYKKQNVSVRIEESSQKPHHLAVKFLFQGGQTDIVLVHLHPVNSGRTRFMNRRHGTAVWETDAAVEGAVVFQLRVISGFDGMWVRAEREMPANWRPGMIYDLGIQIDAIAKGQESCTPCDEGQW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2785707 2788419 - MC04g_new0088 Mch4g0437 685149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0437 263 Pfam Lytic transglycolase 57 134 IPR009009 -
Mch4g0437 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Mch4g0437 263 SMART dpbb_1 57 134 IPR007112 -
Mch4g0437 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Mch4g0437 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Mch4g0437 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Mch4g0437 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Mch4g0437 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Mch4g0437 263 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Mch4g0437 263 PANTHER EXPANSIN-B3 8 245 - -
Mch4g0437 263 Pfam Expansin C-terminal domain 146 225 IPR007117 -
Mch4g0437 263 CDD DPBB_EXLA_N 14 141 - -
Mch4g0437 263 Gene3D - 12 140 IPR036908 -
Mch4g0437 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Mch4g0437 263 Gene3D - 141 245 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0435 Mch-Chr4:2779091 Mch4g0437 Mch-Chr4:2785707 1.48E-89 dispersed
Mch4g0437 Mch-Chr4:2785707 Mch6g2139 Mch-Chr6:23785298 4.87E-46 dispersed
Mch4g0436 Mch-Chr4:2783179 Mch4g0437 Mch-Chr4:2785707 6.19E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0437 - - - 0.0