Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0458 ATGGATACGATTAAGAAATCCTTCAAGAGCAATGTGTCCTTTAAGCACACAAGGAAGATTTCTGCTGGCGGAGGAGGGACCGAAATCAGTCACAAGGAGCTCCCCATTCTTCTCGATCACGAACCTGCTGCAGTTCATCGCCATAGGGGTCGTCGATCGATGAACGATTGCGATCCATCTGACCGCACGGAGGTTATTCTGAAGATCGACGATGGCGGTTCTGCGGCTGTTTCGAGACCAGTAGAAGGCAATGGCGGGAAGGTTTGGCGGGAAACCAACTACGATTTCTGGAACAATGACGGAAAGGGGGAAAATGGGGCGAGTAGGGCTAGTGGTGCGAGTAGGGTTAGTGGTGCGAGAGCGAGTGATAATGGTGATAGGAATGAGGGTTTTGAATTTGTACAGCGTGGGTACGGTGTGGAGGTGGAGGATCCTCCGATGAAGCTGATTGGGGAGTTTCTTCACAAGCAGAAATTGAGGGGGGAAACGACTTTGGACATGGATTTGGAGATGGAGGAGCTGCAACAAGATAGGATTATACCTCCGTTGGCAGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTCAAGGTTTCGTTCCAGCAGGATTCGACCGAAAGTTCAAGCAATGACTCGATTCGGAGGCGATACAGAGACTCCCGCGAGCTGCAAGATGAGTACAAAGGACAGCAATCGCCATGGCAACAATCGCATCACGAACGTCATGGATCTCCGACTATATCTGGTGTTCAGAATGATTGTGCTGCTGAGGCTGCGAGGTGCACGTCTAATTTGTCTTTTCAGAGAGAGCTTTCGTTCCAGAGGACGTCTCATTTGCTGAGGGCGAAAACCAAGTCAAGATTGATGGACCCGCCGGAAGAACCAGCCCTCCTATCTGGCCTCATTCCTAAATCGGGACCGCTACGATCTGGGTTTCTGGGCAAGGGTGAGGAGGAGGACGATGACCCCTTTCTGGAGGAGGACCTTCCAGAGGATTTTAAAAGGAGCGATTTCAGTGTTCTAACACTGCTGCAATGGATCAGTTTGGTTCTAATCACTGGGGCTTTAGTTTGCACTCTTTATATTCCTTATTTGAGGGCAATGAGCCTATGGGAGTTGAATATATGGAAATGGGAGGTGATGGTTTTGATACTGATTTGTGGACGATTGGTGTCTGGTTGGGGGATTAGGATCATAGTGTTTTGCATCGAGAGAAATTTTCTTTTGCGTAAAAGGCTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTATATGGTTAGGCCTTGTTCTGATCGCGTGGCGTTTGTTGTTCAATAAGCGGGTTGAGAGTGAAACCAATGGCACTGTGCTCAAATACGTGAGGAGAGTTTTAGTTTCTCTCTTGGTCAGCACCTTGATTTGGCTAGTGAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCATTGTTTAACCAATATGTCATCGAGACACTCTCGGGGCCGCCGCTGATTGAAATTCGGAAGAATGAGGAAGCAGAGGAGAGGCTTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTTAGCATACCCCCTGACCTCAAGGCAGACACCTCCTCTGTAAAGAGTGGAAGGGTAATTGGTGGTGGAGTGAACCAGAAAAGTTCTCATGGAAAAAGTTCTCATGGAAAAAGTTCTCGACCACTTACCAAAAATGGAAACGATGGCATAACGATTGACCACTTGCATAAACTAAGTCCTAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGAACATGGTTCGATATGGGAGTATTTCAACACTGGATGAGCAGATACCTGGGCCGTGTCTTGAGGATGAATCTACTAGAGAGATCAGAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAATGTGGCTCGGCGTGAGTTGAAGTACATATACCCGGAGGATTTAATGCGCTTCATGAGAGAAGATGAGGTTTTGAGAACAATGAGTCTCTTTGAAGGAGCAACCGAAAGCCGGAGGATAAGTAAATCTTCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGATCCCTTGCTTTGACGTTGAATGATACGAAAACAGCTGTTGATAGGCTACACCATATGGTGAATGTCATATTCGGCATCCTTATATTGATTTTATGGCTTATATTACTAGGAATTGCGAGCAGCAAATTTTTCGCCTTCGTTAGTTCCCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAGACCATATTCGAAGCAATCATCTTCTTGTTTGTCATGCACCCGTTTGACGTTGGAGATCGATGTGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATCTTGACCACCGTATTCTTGAGATATGACAACCTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATTCACAATTTTTACCGTAGTCCTGACATGGGCGAATCCGTTGAATTCTGCATCCATATAGCGACACCAGCCGAGACAATTGCTACCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGCACACTGGAGCCCTTCCCCTATGTTTGTGTTCAAGGATGTAGAGGAGTTAAATAGGCTGAGATTGGCAGTTTGGTTGTCACACAGAATGAATCACCAAGACTCGGGCGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAACAGGTCGTGAAGGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATGTCCATTCCCTGCCTTCTTCTGCACCCTCCATGGGCTTTACATCTACTTGA 2868 45.96 MDTIKKSFKSNVSFKHTRKISAGGGGTEISHKELPILLDHEPAAVHRHRGRRSMNDCDPSDRTEVILKIDDGGSAAVSRPVEGNGGKVWRETNYDFWNNDGKGENGASRASGASRVSGARASDNGDRNEGFEFVQRGYGVEVEDPPMKLIGEFLHKQKLRGETTLDMDLEMEELQQDRIIPPLAESPLSQTSKDLKVSFQQDSTESSSNDSIRRRYRDSRELQDEYKGQQSPWQQSHHERHGSPTISGVQNDCAAEAARCTSNLSFQRELSFQRTSHLLRAKTKSRLMDPPEEPALLSGLIPKSGPLRSGFLGKGEEEDDDPFLEEDLPEDFKRSDFSVLTLLQWISLVLITGALVCTLYIPYLRAMSLWELNIWKWEVMVLILICGRLVSGWGIRIIVFCIERNFLLRKRLLYFVYGVRKPVQNCIWLGLVLIAWRLLFNKRVESETNGTVLKYVRRVLVSLLVSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEAEERLADEVQKLQNAGVSIPPDLKADTSSVKSGRVIGGGVNQKSSHGKSSHGKSSRPLTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNMVRYGSISTLDEQIPGPCLEDESTREIRSEREAKAAAKKIFQNVARRELKYIYPEDLMRFMREDEVLRTMSLFEGATESRRISKSSLKNWVVNAFRERRSLALTLNDTKTAVDRLHHMVNVIFGILILILWLILLGIASSKFFAFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESVEFCIHIATPAETIATMKQRIISYIEGNKAHWSPSPMFVFKDVEELNRLRLAVWLSHRMNHQDSGERWARRSVLVEQVVKVCQELDIQYRLLPIDINVHSLPSSAPSMGFTST 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2930402 2935449 + MC04g0366 Mch4g0458 685170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0458 955 MobiDBLite consensus disorder prediction 553 581 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 185 207 - -
Mch4g0458 955 Pfam Mechanosensitive ion channel, beta-domain 777 833 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0458 955 Coils Coil 514 537 - -
Mch4g0458 955 SUPERFAMILY Sm-like ribonucleoproteins 774 833 IPR010920 -
Mch4g0458 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 60 945 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch4g0458 955 MobiDBLite consensus disorder prediction 226 248 - -
Mch4g0458 955 FunFam Predicted mechanosensitive ion channel 784 833 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 100 130 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 184 248 - -
Mch4g0458 955 PIRSF Memb_At2g17000 55 953 IPR016688 -
Mch4g0458 955 Gene3D - 784 833 IPR023408 -
Mch4g0458 955 MobiDBLite consensus disorder prediction 537 583 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0085 Mch-Chr11:543000 Mch4g0458 Mch-Chr4:2930402 1.11E-205 dispersed
Mch4g0458 Mch-Chr4:2930402 Mch6g0955 Mch-Chr6:6757565 1.65E-157 dispersed
Mch2g0398 Mch-Chr2:2916034 Mch4g0458 Mch-Chr4:2930402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0458 K22048 - csv:101207426 1436.4