Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0458 ATGGATACGATTAAGAAATCCTTCAAGAGCAATGTGTCCTTTAAGCACACAAGGAAGATTTCTGCTGGCGGAGGAGGGACCGAAATCAGTCACAAGGAGCTCCCCATTCTTCTCGATCACGAACCTGCTGCAGTTCATCGCCATAGGGGTCGTCGATCGATGAACGATTGCGATCCATCTGACCGCACGGAGGTTATTCTGAAGATCGACGATGGCGGTTCTGCGGCTGTTTCGAGACCAGTAGAAGGCAATGGCGGGAAGGTTTGGCGGGAAACCAACTACGATTTCTGGAACAATGACGGAAAGGGGGAAAATGGGGCGAGTAGGGCTAGTGGTGCGAGTAGGGTTAGTGGTGCGAGAGCGAGTGATAATGGTGATAGGAATGAGGGTTTTGAATTTGTACAGCGTGGGTACGGTGTGGAGGTGGAGGATCCTCCGATGAAGCTGATTGGGGAGTTTCTTCACAAGCAGAAATTGAGGGGGGAAACGACTTTGGACATGGATTTGGAGATGGAGGAGCTGCAACAAGATAGGATTATACCTCCGTTGGCAGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTCAAGGTTTCGTTCCAGCAGGATTCGACCGAAAGTTCAAGCAATGACTCGATTCGGAGGCGATACAGAGACTCCCGCGAGCTGCAAGATGAGTACAAAGGACAGCAATCGCCATGGCAACAATCGCATCACGAACGTCATGGATCTCCGACTATATCTGGTGTTCAGAATGATTGTGCTGCTGAGGCTGCGAGGTGCACGTCTAATTTGTCTTTTCAGAGAGAGCTTTCGTTCCAGAGGACGTCTCATTTGCTGAGGGCGAAAACCAAGTCAAGATTGATGGACCCGCCGGAAGAACCAGCCCTCCTATCTGGCCTCATTCCTAAATCGGGACCGCTACGATCTGGGTTTCTGGGCAAGGGTGAGGAGGAGGACGATGACCCCTTTCTGGAGGAGGACCTTCCAGAGGATTTTAAAAGGAGCGATTTCAGTGTTCTAACACTGCTGCAATGGATCAGTTTGGTTCTAATCACTGGGGCTTTAGTTTGCACTCTTTATATTCCTTATTTGAGGGCAATGAGCCTATGGGAGTTGAATATATGGAAATGGGAGGTGATGGTTTTGATACTGATTTGTGGACGATTGGTGTCTGGTTGGGGGATTAGGATCATAGTGTTTTGCATCGAGAGAAATTTTCTTTTGCGTAAAAGGCTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTATATGGTTAGGCCTTGTTCTGATCGCGTGGCGTTTGTTGTTCAATAAGCGGGTTGAGAGTGAAACCAATGGCACTGTGCTCAAATACGTGAGGAGAGTTTTAGTTTCTCTCTTGGTCAGCACCTTGATTTGGCTAGTGAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCATTGTTTAACCAATATGTCATCGAGACACTCTCGGGGCCGCCGCTGATTGAAATTCGGAAGAATGAGGAAGCAGAGGAGAGGCTTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTTAGCATACCCCCTGACCTCAAGGCAGACACCTCCTCTGTAAAGAGTGGAAGGGTAATTGGTGGTGGAGTGAACCAGAAAAGTTCTCATGGAAAAAGTTCTCATGGAAAAAGTTCTCGACCACTTACCAAAAATGGAAACGATGGCATAACGATTGACCACTTGCATAAACTAAGTCCTAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGAACATGGTTCGATATGGGAGTATTTCAACACTGGATGAGCAGATACCTGGGCCGTGTCTTGAGGATGAATCTACTAGAGAGATCAGAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAATGTGGCTCGGCGTGAGTTGAAGTACATATACCCGGAGGATTTAATGCGCTTCATGAGAGAAGATGAGGTTTTGAGAACAATGAGTCTCTTTGAAGGAGCAACCGAAAGCCGGAGGATAAGTAAATCTTCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGATCCCTTGCTTTGACGTTGAATGATACGAAAACAGCTGTTGATAGGCTACACCATATGGTGAATGTCATATTCGGCATCCTTATATTGATTTTATGGCTTATATTACTAGGAATTGCGAGCAGCAAATTTTTCGCCTTCGTTAGTTCCCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAGACCATATTCGAAGCAATCATCTTCTTGTTTGTCATGCACCCGTTTGACGTTGGAGATCGATGTGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATCTTGACCACCGTATTCTTGAGATATGACAACCTGAAGGTTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATTCACAATTTTTACCGTAGTCCTGACATGGGCGAATCCGTTGAATTCTGCATCCATATAGCGACACCAGCCGAGACAATTGCTACCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGCACACTGGAGCCCTTCCCCTATGTTTGTGTTCAAGGATGTAGAGGAGTTAAATAGGCTGAGATTGGCAGTTTGGTTGTCACACAGAATGAATCACCAAGACTCGGGCGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAACAGGTCGTGAAGGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATGTCCATTCCCTGCCTTCTTCTGCACCCTCCATGGGCTTTACATCTACTTGA 2868 45.96 MDTIKKSFKSNVSFKHTRKISAGGGGTEISHKELPILLDHEPAAVHRHRGRRSMNDCDPSDRTEVILKIDDGGSAAVSRPVEGNGGKVWRETNYDFWNNDGKGENGASRASGASRVSGARASDNGDRNEGFEFVQRGYGVEVEDPPMKLIGEFLHKQKLRGETTLDMDLEMEELQQDRIIPPLAESPLSQTSKDLKVSFQQDSTESSSNDSIRRRYRDSRELQDEYKGQQSPWQQSHHERHGSPTISGVQNDCAAEAARCTSNLSFQRELSFQRTSHLLRAKTKSRLMDPPEEPALLSGLIPKSGPLRSGFLGKGEEEDDDPFLEEDLPEDFKRSDFSVLTLLQWISLVLITGALVCTLYIPYLRAMSLWELNIWKWEVMVLILICGRLVSGWGIRIIVFCIERNFLLRKRLLYFVYGVRKPVQNCIWLGLVLIAWRLLFNKRVESETNGTVLKYVRRVLVSLLVSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEAEERLADEVQKLQNAGVSIPPDLKADTSSVKSGRVIGGGVNQKSSHGKSSHGKSSRPLTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNMVRYGSISTLDEQIPGPCLEDESTREIRSEREAKAAAKKIFQNVARRELKYIYPEDLMRFMREDEVLRTMSLFEGATESRRISKSSLKNWVVNAFRERRSLALTLNDTKTAVDRLHHMVNVIFGILILILWLILLGIASSKFFAFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRYDNLKVIIPNSVLATKLIHNFYRSPDMGESVEFCIHIATPAETIATMKQRIISYIEGNKAHWSPSPMFVFKDVEELNRLRLAVWLSHRMNHQDSGERWARRSVLVEQVVKVCQELDIQYRLLPIDINVHSLPSSAPSMGFTST 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2930402 2935449 + MC04g0366 Mch4g0458 685170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0458 955 MobiDBLite consensus disorder prediction 553 581 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 185 207 - -
Mch4g0458 955 Pfam Mechanosensitive ion channel, beta-domain 777 833 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0458 955 Coils Coil 514 537 - -
Mch4g0458 955 SUPERFAMILY Sm-like ribonucleoproteins 774 833 IPR010920 -
Mch4g0458 955 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 60 945 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch4g0458 955 MobiDBLite consensus disorder prediction 226 248 - -
Mch4g0458 955 FunFam Predicted mechanosensitive ion channel 784 833 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 100 130 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 184 248 - -
Mch4g0458 955 PIRSF Memb_At2g17000 55 953 IPR016688 -
Mch4g0458 955 Gene3D - 784 833 IPR023408 -
Mch4g0458 955 MobiDBLite consensus disorder prediction 537 583 - -
Mch4g0458 955 MobiDBLite consensus disorder prediction 208 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0458 K22048 - - csv:101207426 1436.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0085 Mch-Chr11:543000 Mch4g0458 Mch-Chr4:2930402 1.11E-205 dispersed
Mch4g0458 Mch-Chr4:2930402 Mch6g0955 Mch-Chr6:6757565 1.65E-157 dispersed
Mch2g0398 Mch-Chr2:2916034 Mch4g0458 Mch-Chr4:2930402 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67