Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0471 ATGTTATCGGGGTTGATAAACTTTTTGAGGGGCTGTTTCCGGCCAGGCTCCGATCGGTGTGTGGCCGCGGATATCAGGGGGCGGCGGGACGGGCTGCTGTGGTACAAAGACCGCGGACAACACTTGAATGGTGAGTTCTCAATGTCTGTGGTTCAGGCCAACAATTTGCTTGAAGATCAGAGCCAGATTGAGTCTGGGAGTTTGAGTTCTCTTGAGTCTGGCCCCAGAGGTACATTTGTTGGTGTGTATGATGGCCATGGAGGTCCTGAGACTTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCGATGTCTGGGGAAGTAATACGCAAGGCATTCCAAGCGACTGAGGAGGGCTTTCTTTCTCTAGTCCGAAGACAATGGCCAACGAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTTGTTGGTGTAATCTGTAACGGGACTCTCTACGTTGCGAATCTAGGTGATTCACGTGCCGTTTTGGGTAGATTAGGGAAAGCAACAGGTGAGGTTCTAGCCATTCAGTTATCAACGGAGCACAATGTTTGTTATGAGTCTGAGAGGCAAGAGCTGCAATCTTTGCACCCTGATGATTCCCAGATTGTAGTCTTAAAGCATAATGTTTGGCGAGTAAAGGGCATCATACAGATTTCCAGATCTATAGGCGATGTCTACTTGAAGAAAGCTGAGTTCAACAGAGAACCTCTGTTTTTGAAGTTTCGAGTTCGGGAACCCTTCAGAAGGCCGATTTTGAGCTCTGAACCATCCATTTCAGAGACCCAGTTGAAGCCAGATGATAAATTTATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCGATATAGTTCATAACCATTCTCGAAGGGGAAGTGCAAGAAGACTGGTCAAAACTGCTCTTCAAATAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGACTTGAAGAAGATTGACCGTGGTGTTCGTCGCCATTTCCACGACGACATCACTGTGGTGGTTGTGTATCTCGATACAAATCTGCTCTACAAAGCGAGCTCTGCCAAGAGCTCGAGTGTCTCGCTACGAGGGGGTGGAGTCAATCGGCTTCCTTCCCGTGTAGACGCTGGCAACTCCTGA 1167 47.47 MLSGLINFLRGCFRPGSDRCVAADIRGRRDGLLWYKDRGQHLNGEFSMSVVQANNLLEDQSQIESGSLSSLESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSGEVIRKAFQATEEGFLSLVRRQWPTNPQIAAVGSCCLVGVICNGTLYVANLGDSRAVLGRLGKATGEVLAIQLSTEHNVCYESERQELQSLHPDDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLFLKFRVREPFRRPILSSEPSISETQLKPDDKFIIFASDGLWEHLSNQEAVDIVHNHSRRGSARRLVKTALQIAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVYLDTNLLYKASSAKSSSVSLRGGGVNRLPSRVDAGNS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3011548 3016182 - MC04g0379 Mch4g0471 685183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0471 388 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Mch4g0471 388 CDD PP2Cc 46 353 IPR001932 -
Mch4g0471 388 FunFam Phosphatase 2C family protein 34 363 - -
Mch4g0471 388 PANTHER PROTEIN PHOSPHATASE 37 352 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch4g0471 388 Gene3D - 34 363 IPR036457 -
Mch4g0471 388 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
Mch4g0471 388 SMART PP2C_4 37 351 IPR001932 -
Mch4g0471 388 Pfam Protein phosphatase 2C 67 321 IPR001932 -
Mch4g0471 388 SUPERFAMILY PP2C-like 51 354 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1618 Mch-Chr1:17234809 Mch4g0471 Mch-Chr4:3011548 1.19E-207 dispersed
Mch4g0471 Mch-Chr4:3011548 Mch5g1801 Mch-Chr5:18398076 1.69E-168 dispersed
Mch2g0384 Mch-Chr2:2843424 Mch4g0471 Mch-Chr4:3011548 7.39E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0471 - - - 0.0