Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0481 ATGTCGAAGGAGGTGAGGGAGGAGGGAGAGGCCGGGCGGGGCAAGGACTACGTGGACCCGCCGCCGGCGCCGCTCATCGACGTGGCGGAGCTCACCCTCTGGTCCTTCTACAGAGCCCTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAACAGACCAACGTTTGCGACGGTGTCGGAATTCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCCGGTGGTCATATTAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCAAGGAAAGTGTCGCTATTCCGAGCCGTGGGGTACATGTTGGCGCAGTGCGCCGGAGCCATCGTCGGCGTTGGTTTGGTCAAGGCCTTCATGAAGCACGACTACAACAACCACGGCGGCGGAGCCAACTCAGTAAGTTCCGGCTACAACAAGGGCACCGCTCTCGGCGCTGAAATCATCGGAACCTTTGTTCTTGTTTACACCGTTTTCTCCGCCACTGATCCCAAGAGAAGCGCCCGTGACTCCCATATCCCTGTGTTGGCTCCGTTGCCCATTGGTTTCGCGGTTTTCATGGTTCATTTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTCATCTACAACCAGGAGAAGCCCTGGAACGACCACTGGATTTTCTGGGTGGGTCCGTTCGTCGGAGCACTGGCGGCGGCGGTGTACCACCAATACATTCTCCGAGCAGCCGCCATTAAGGCGTTGGGATCATTCCGCAGCAACCCCACCAACTAA 843 59.67 MSKEVREEGEAGRGKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTNVCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLFRAVGYMLAQCAGAIVGVGLVKAFMKHDYNNHGGGANSVSSGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNQEKPWNDHWIFWVGPFVGALAAAVYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3094758 3096277 - MC04g_new0094 Mch4g0481 685193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0481 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Mch4g0481 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Mch4g0481 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Mch4g0481 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Mch4g0481 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Mch4g0481 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g0481 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0481 Mch-Chr4:3094758 Mch4g2057 Mch-Chr4:22803334 3.35E-153 dispersed
Mch2g0984 Mch-Chr2:6647741 Mch4g0481 Mch-Chr4:3094758 7.63E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0481 K09872 - csv:101209627 537.339