Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0488 ATGGACGACGGGGAGCTTGATTTTTCAAATCAAGAAGTGTTTTCGAGCCCTAATATGGAGCTTCCTAGCAGTTGTTCAATGGATAGTTTCTTTGATGAACTTCTCAAGGACACTCATACTTGTACCCACACCCACACTTGCAATCCACCGGGCCCTGACTATTCTCATACCCACACCTGTTTTCATGTCCACACCAAAATTGTCCCTGCCCCAACTGACGACAAGGTCGTCACTGATGACACTGCAGAATCGACCGAGAAGAAGTCGAAGAAACGCCCGACGGGCAACCGAGAAGCGGTTCGTAAGTATCGCGAGAAGAAGAAGGCCAGGGCAGCCTCATTGGAGGATGAAGTTGTTAGATTGAGGGCTTTGAATCAGCATTTAATGAAGAGGCTGCAGGGTCAGGCAGCACTGGAGGCTGAGGTTGCTAGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGATCTTTCCCTTACCAGAAAGCTGTTAATCCCAACCTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGGGGATCAGGTTTACTGCCTCCATCCTGACGTTGATGGCAGCAGAAGTGGTGAAGGCGCCGTGATAAATGGACAGAGTTTTGGTGCTTGTGAATTTGAAAATCTTCAGTGTTTGGCAAATCAAGACTCGGGATTGAAAGAGCTACCTGGGTGCGAAATAGGGAATGTGATTCCAAATGATATTTCTTCAGCAGCCACGAAGAAAAAAGGT 783 47.64 MDDGELDFSNQEVFSSPNMELPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPTDDKVVTDDTAESTEKKSKKRPTGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAYVMNPCNMQCGDQVYCLHPDVDGSRSGEGAVINGQSFGACEFENLQCLANQDSGLKELPGCEIGNVIPNDISSAATKKKG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3155891 3156673 - MC04g0394 Mch4g0488 685200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0488 261 CDD bZIP 96 143 - -
Mch4g0488 261 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 178 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Mch4g0488 261 Pfam Basic region leucine zipper 85 141 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0488 261 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 133 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0488 261 SUPERFAMILY Leucine zipper domain 88 134 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0488 261 MobiDBLite consensus disorder prediction 72 104 - -
Mch4g0488 261 SMART brlzneu 84 151 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0488 261 MobiDBLite consensus disorder prediction 76 102 - -
Mch4g0488 261 Coils Coil 97 131 - -
Mch4g0488 261 Gene3D - 75 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0989 Mch-Chr2:6685852 Mch4g0488 Mch-Chr4:3155891 1.24E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43151 PF07716 bZIP_2 7.70E-14 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0488 K25785 - csv:101208161 478.018