Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0544 ATGGGTGATACTGAAGATGCTAATACTGATACCATGCGAAATCTTCAATGTTCGTTTGGGGCATCTTCTTCTTCAGCTGTAAATCTTCCTTTCTCGATGGATCAGCTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCGCAGCACTTTCAGTCGAATTTTCTTGGTGATAATAATAATAGTAGAAGAGCTGGGATACCTCCTAGTCCCAACTCACCGCAGATCCCGCCAATCTCGCCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAAAGTTTCAACCCAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCGTCCTTTTTCTCGCTCGATGCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGTGAGTCCCCAACTACATCAAATTCAGATCAGGTTTCTGCTGATACATCAATGGAGGATAGGGACGCCAGTTCACATTCGTTGTTGCCTCCCTCACCCTCACCTTATATGAGGGCCAATTCTTCTAAGATTGGGGATTCTCTACCCCCTCGTAAAGCACATAGGAGGTCTAGTAGCGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCGGTAGCTCGGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGCGGGCATGTTAAAGCCGGCTAGCCAGTTTGTTAAGAGAGAACCCAGTTTGGAGAAAAGCGTTGACAACAATTTGGAAGGAATGGGTGAGAGGAAATCGGATGGGGACAGTGTGGACGACCTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTTAACTCTTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGGGGTAGTGGAACGAAGACAAATGGTGGTGATAGTAGTGATAACGAAGCAGAAAGCAGCGTAAATGAAAGTGGGGATAACTCCCAAATGCCTGGAATGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGAACTGCGGGAGGGGATATCGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCACCTAGTGTTCGTCCAGGACAAATTTCTTCAAATAATTTAGTTGATGGTAATTCAGGTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCTCTAACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTACAGAGAGATTCAGTTGGACTTACAAACCAGAACAATGAGCTGAAGTTTCGGCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTAAATGAAGCCTTGACCGCAGAGGTTCAGAGGTTGAAGCTCGCTACAAACGAGTTAAACGCGCAGTCTCATCCGTCTAATGGAGTAATGCCTCAACCTACCATCAGTCACCATAGCCTCCAGCTCCAGCACCAGCAGCAGCAGCGCCATCAACAGCAACAAATGCAGCAGAATGGCAGTTCAGCCACAGAACCAGAGTCCAATCAGAAGTAG 1722 46.28 MGDTEDANTDTMRNLQCSFGASSSSAVNLPFSMDQLKISQMNCSQIRPQHFQSNFLGDNNNSRRAGIPPSPNSPQIPPISPYSQIPISRPMNQQSFNPVPTHSRSLSQPSFFSLDALPPLSPSPFRESPTTSNSDQVSADTSMEDRDASSHSLLPPSPSPYMRANSSKIGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFGSSGGLERSTSSKENAGMLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGDSSDNEAESSVNESGDNSQMPGMNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPSVRPGQISSNNLVDGNSGPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATNELNAQSHPSNGVMPQPTISHHSLQLQHQQQQRHQQQQMQQNGSSATEPESNQK 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3432065 3436129 - MC04g0429 Mch4g0544 685256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0544 573 MobiDBLite consensus disorder prediction 360 388 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 152 166 - -
Mch4g0544 573 Coils Coil 505 525 - -
Mch4g0544 573 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 158 560 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch4g0544 573 SUPERFAMILY Leucine zipper domain 426 477 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0544 573 MobiDBLite consensus disorder prediction 524 573 - -
Mch4g0544 573 Coils Coil 442 497 - -
Mch4g0544 573 Gene3D - 425 477 - -
Mch4g0544 573 SMART brlzneu 422 486 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0544 573 MobiDBLite consensus disorder prediction 272 347 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 70 84 - -
Mch4g0544 573 Pfam bZIP transcription factor 426 480 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0544 573 MobiDBLite consensus disorder prediction 206 220 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 293 325 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 51 69 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 85 114 - -
Mch4g0544 573 CDD bZIP_plant_RF2 427 476 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0544 573 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 424 487 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0544 573 MobiDBLite consensus disorder prediction 232 254 - -
Mch4g0544 573 MobiDBLite consensus disorder prediction 51 254 - -
Mch4g0544 573 FunFam probable transcription factor PosF21 425 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0268 Mch-Chr4:1744494 Mch4g0544 Mch-Chr4:3432065 1.31E-10 dispersed
Mch4g0544 Mch-Chr4:3432065 Mch4g1880 Mch-Chr4:21473069 3.93E-43 dispersed
Mch4g0544 Mch-Chr4:3432065 Mch4g0545 Mch-Chr4:3439687 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43155 PF00170 bZIP_1 8.10E-09 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0544 - - - 0.0