Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0545 ATGGGCGACACTGAAGATGCTCGTACTGATAGAAATCTTCAATGTTCGTTTGGAGCATCTTCCTCCTCAGCTGTGAAGCATCATTTCTCGATGGATCAACTTAAACTTTCTCAAATGAACTGCTCACAAGTTCGTCCACAGCACTTTCAGTCAAATTTTCTTGGAGAGAATAATAGGAGAATTGGGATTCCGCCTTCTCCCAACTCAACGCAGATCCCACCAATCTCACCGTATTCTCAGATCCCGATCTCCCGTCCGATGAACCAGCAGAGTTTCAACCCAGTGCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCTCCTTTAAGCCCGTCTCCATTTCGTGACTCCCCATCTACATCAAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAAGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCATCACCTTATATGAGAGCCAATTCTTCTAAGATTGGAGATGCTTTACCTCCTCGTAAAGCACACAGGCGGTCTAATAGTGATATTCCTTTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCATTTAGTGGTTCGGGCGGATTGGAGCGATCAACAAGTAATAAAGAGAATGCGGGCATGCTAAGGCCGGCCAGTCAGTTTGTTAAAAGAGAACCCAGTTTGGAGAAAAGCGTTGATAACAATTTGGAAGGAATGGGTGAGAGGAAATCCGAAGGGGAAACTGTGGATGATTTATTTTCTGCTTACATGAATTTGGATAATATTGATTTGTTCAACTCTTCAGGGACCAACGACAAGAATGGTCATGAGAGTCGGGAGGACTTGGATAGTAGAGGTAGCGGAACAAAGACAAATGGGGGTGACAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAATTCTCAAATTCCTGGATTGTATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGAACTGCGGGGGGAGATATCGCTCCAACTACCAGACATTACCGAAGTGTTTCCATGGATAGCTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCACCCAAGATGCCTCCTACACCACCTGGTATTCGTTCAGGACAAATTTCTTCAAACAATTTAGTTGATGGCAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCTCTAACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACATAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTCTACAGAGAGATTCAGTTGGGCTTACGAACCAGAATAATGAGCTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTAAATGAAGCCTTAACCGCGGAGGTTCAGAGACTGAAGCTCGCCACAACTGATATAAACGCACAGTCTCATCCCTCGAATGGGGTAATGAATCACCATGGACTCCAACTTCAGCTTCAGCAGCAGCACCAACAGCAACAGCAACAGCAACATATGCAGCAGCAGAATGGGAGTGCAACCACAAAACCAGAGTCCAACCAA 1692 44.92 MGDTEDARTDRNLQCSFGASSSSAVKHHFSMDQLKLSQMNCSQVRPQHFQSNFLGENNRRIGIPPSPNSTQIPPISPYSQIPISRPMNQQSFNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSKIGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSNKENAGMLRPASQFVKREPSLEKSVDNNLEGMGERKSEGETVDDLFSAYMNLDNIDLFNSSGTNDKNGHESREDLDSRGSGTKTNGGDSSDNEAESSVNESGDNSQIPGLYSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGIRSGQISSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMNHHGLQLQLQQQHQQQQQQQHMQQQNGSATTKPESNQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3439687 3443338 - MC04g0430 Mch4g0545 685257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0545 564 MobiDBLite consensus disorder prediction 266 340 - -
Mch4g0545 564 FunFam probable transcription factor PosF21 419 472 - -
Mch4g0545 564 MobiDBLite consensus disorder prediction 73 113 - -
Mch4g0545 564 CDD bZIP_plant_RF2 421 470 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0545 564 MobiDBLite consensus disorder prediction 179 214 - -
Mch4g0545 564 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 152 553 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch4g0545 564 Pfam bZIP transcription factor 420 474 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0545 564 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 418 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0545 564 MobiDBLite consensus disorder prediction 357 382 - -
Mch4g0545 564 SUPERFAMILY Leucine zipper domain 420 471 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g0545 564 MobiDBLite consensus disorder prediction 226 247 - -
Mch4g0545 564 MobiDBLite consensus disorder prediction 534 564 - -
Mch4g0545 564 MobiDBLite consensus disorder prediction 287 318 - -
Mch4g0545 564 Gene3D - 419 471 - -
Mch4g0545 564 Coils Coil 436 491 - -
Mch4g0545 564 MobiDBLite consensus disorder prediction 56 247 - -
Mch4g0545 564 SMART brlzneu 416 480 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0545 Mch-Chr4:3439687 Mch4g1880 Mch-Chr4:21473069 9.04E-43 dispersed
Mch4g0544 Mch-Chr4:3432065 Mch4g0545 Mch-Chr4:3439687 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43156 PF00170 bZIP_1 8.70E-09 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0545 - - - 0.0