Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0558 | ATGGAGTTTTTAAGTCCCTTCTTGTTATTCTCCATTTTTTTCTTCTCTCTTTTTCTTTTAGTGATCAATTTTCTAAGGCGTAAACTCCCTTACCCGCCAGGCCCCCATGGACTACCCATCATTGGTAACATGTTGATGATGGACCAACTCACCCACCGTGGCCTCGCCCATCTCACCGCCATCTACGGTGGCCTCTTCCATCTCCGCCTCGGCGTCCTCCACATGGTCGTCGTGTCCACGCCTGAGATGGCGCGTGAGTTCCTCCAAGTTCAAGACATTGCCTTTGCCAATAGGCCAGCCAACGTGGCGATCACTTATCTCACCTACGATCGTGCTGACATGGCCTTCGCCAACTATGGCCCGTTTTGGCGCCAAATACGAAAGATTTGCGTCATGAAACTCTTCAGCCGCCGACGCGCCGAGTCGTGGGCGTCGGTGCGTGACGAAGTCAACGCCGTAGTCCGAATCATTTCGGCCAAAATCCACGAGCCAGTGAACATAGGCGAGCTGGTTTTTGGTCTAACACGAAACATAATTTACAAGGCTGCGTTCGGATCGAGCTCGCACGAAGGACAAGATGAGTTCGTGAAGATCTTGCAGGAATTCTCCAAATTGTTTGGAGCTTTTAATATTGCAGATTTTCCGTGGTTGGGTTGGATTCATGCGAGAGAATTTAATGAAAGATTGACGAGAGCGAGAGGAGCTCTCGACGTGTTCATCGATAGCATAATCGATGAACACAAAGAGAAGAAGAAAAAGGAAGAAGGAGAAGATTCAGATATGGTGGATGAATTGATGGCGTTCTTTGTTGATGAGTCAAGTAGAAGTGAGTTTGATGATTCACACTCGGTTCTTAAGCTCACTAGAGATAACATCAAAGCCATAATCATGGACGTGATGTTCGGCGGAACGGAGACGGTGGCGTCGGTAATAGAGTGGGCCATGGCGGAGCTTATGAAGAATCCGCCGGAGCTCAAAAAAGTCCAACAAGAACTCGAACAAGTCGTCGGATTAGACCGGAATCTCCACGAATCCGACCTCGAAAACCTCCCCTACTTGAAATTCGCCGTCAAAGAAACGCTCCGCCTCCACCCGCCGATTCCGCTGCTCCTCCACGAGACCGCCGTCGACACCGCCGTCGCCGGCTACTTCATTCCTGCCGGCTCCAGAGTCTGGATCAACGCTTGGGCGATCGGCCGCGACGGAGCCGCCTGGCCTGACCCGGACAGATTCCGGCCGGCGAGGTTCCAAGACGCCGCCGCGCCGGATTTCAAGGGGAGCGATTTCGAGTTCCTTCCGTTCGGGTCGGGTCGGAGGTCGTGCCCCGGAATGCAACTCGGGTTGTACGCGTGTGAGATGGCAGTGGCGAATCTTCTCCACTGTTTTAATTGGGAGTTGCCTGACGGAATGGGAACCGAAGAACTCGATATGAACGACTCGTTCGGACTCACCGCTCCGAGAGCGGTTCGACTCGTTGCCGTTCCGAGTTACCGGCTTAACTCGCCGGAGTTCGAACTCCGAGGCAAGAGATGGGAAGAT | 1539 | 52.76 | MEFLSPFLLFSIFFFSLFLLVINFLRRKLPYPPGPHGLPIIGNMLMMDQLTHRGLAHLTAIYGGLFHLRLGVLHMVVVSTPEMAREFLQVQDIAFANRPANVAITYLTYDRADMAFANYGPFWRQIRKICVMKLFSRRRAESWASVRDEVNAVVRIISAKIHEPVNIGELVFGLTRNIIYKAAFGSSSHEGQDEFVKILQEFSKLFGAFNIADFPWLGWIHAREFNERLTRARGALDVFIDSIIDEHKEKKKKEEGEDSDMVDELMAFFVDESSRSEFDDSHSVLKLTRDNIKAIIMDVMFGGTETVASVIEWAMAELMKNPPELKKVQQELEQVVGLDRNLHESDLENLPYLKFAVKETLRLHPPIPLLLHETAVDTAVAGYFIPAGSRVWINAWAIGRDGAAWPDPDRFRPARFQDAAAPDFKGSDFEFLPFGSGRRSCPGMQLGLYACEMAVANLLHCFNWELPDGMGTEELDMNDSFGLTAPRAVRLVAVPSYRLNSPEFELRGKRWED | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3540876 | 3543075 | - | MC04g0442 | Mch4g0558 | 685270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0558 | 513 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 434 | 443 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch4g0558 | 513 | CDD | CYP71-like | 62 | 491 | - | - | |
| Mch4g0558 | 513 | PANTHER | CYTOCHROME P450 84A1-RELATED | 8 | 502 | IPR053062 | GO:0004497(PANTHER) | |
| Mch4g0558 | 513 | SUPERFAMILY | Cytochrome P450 | 32 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | P450 superfamily signature | 432 | 441 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | Pfam | Cytochrome P450 | 32 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | Gene3D | Cytochrome P450 | 25 | 497 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | FunFam | Cytochrome P450 84A1 | 24 | 497 | - | - | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 394 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 441 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 83 | 104 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 354 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 59 | 78 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 431 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 174 | 192 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g0558 | 513 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1563 | Mch-Chr1:16881486 | Mch4g0558 | Mch-Chr4:3540876 | 8.32E-239 | dispersed | |
| Mch4g0558 | Mch-Chr4:3540876 | Mch8g1025 | Mch-Chr8:7237681 | 6.89E-115 | dispersed | |
| Mch4g0558 | Mch-Chr4:3540876 | Mch3g1399 | Mch-Chr3:16503374 | 6.09E-111 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g0558 | K09755 | - | csv:101217850 | 811.216 |