Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0563 ATGAAGATCCGTTGCGATGTCTGTGATAAAGCGGAAGCCGCTGTATTCTGCTCCGCCGATGAAGCCGCTCTCTGCCATGGCTGCGATCTCCAGGTCCACCAGGCGAACAAGCTCGCCGGCAAGCACTCCCGATTTTCGCTGCTTCAGCCGATCGTAACGGAATCTCCTATCTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCGATTCTTTGCAGAGAATGCGACATTTCAATTCATGAAGCGAACGAACATACGCAGAAGCACAGCAGATTTCTTCTCACAGGTGTGAAGCTTTCTCCGACTTGTTTTTCGTACCAAACATCTTCCTCCTCCGATGGCTGTGATGCCGGCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGCAAGAGGCCTAAAACGGCCACGAAAGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCAGCTCCGTCGACAAGTAATTACAAGGCCGAAGACGGCCAAGCGAGCGACGGCGGTTCGCTCTCGACGAGCAGCATATCGGAGTATCTGGAGACACTACCGGGATGGTGCGTGGAGGAATTTCTCGATCCTTCCGCGGCCGCCGCCAATCGTTTCTGTAAGTTTAACAGCGAAATTGTGGCATTTGAGAATCAAAATCTAGAGGACCAACACGAATCATTGGGCACCACCAGATTTGGCAACACACTGGAATTTTCAGGTAAAATTTCTCAAACTAGGTCTTGGAATGGGGTAGGAATCTCCAGGAAAACTTGTAGACGTGAAAAAATGGGGGTGGGTGATCAGATCATCAGCAGCTTCGGCTCTGAAAGTGAAACAATTCTGGTAAAATAA 855 50.06 MKIRCDVCDKAEAAVFCSADEAALCHGCDLQVHQANKLAGKHSRFSLLQPIVTESPICDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSPTCFSYQTSSSSDGCDAGMDVKTGSSHACSKRPKTATKEISSSHSAEKAAPSTSNYKAEDGQASDGGSLSTSSISEYLETLPGWCVEEFLDPSAAAANRFCKFNSEIVAFENQNLEDQHESLGTTRFGNTLEFSGKISQTRSWNGVGISRKTCRREKMGVGDQIISSFGSESETILVK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3576947 3579467 - MC04g0445 Mch4g0563 685275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0563 284 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch4g0563 284 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch4g0563 284 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 FunFam B-box zinc finger protein 21 1 98 - -
Mch4g0563 284 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 MobiDBLite consensus disorder prediction 145 175 - -
Mch4g0563 284 CDD Bbox1_BBX-like 57 100 IPR049808 -
Mch4g0563 284 Gene3D Classic Zinc Finger 1 99 - -
Mch4g0563 284 MobiDBLite consensus disorder prediction 130 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0563 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0147 Mch-Chr11:924436 Mch4g0563 Mch-Chr4:3576947 4.46E-57 dispersed
Mch4g0563 Mch-Chr4:3576947 Mch7g0133 Mch-Chr7:1637820 1.20E-35 dispersed
Mch8g0518 Mch-Chr8:3659387 Mch4g0563 Mch-Chr4:3576947 1.12E-09 transposed
Mch2g1076 Mch-Chr2:7253384 Mch4g0563 Mch-Chr4:3576947 1.50E-71 wgd
Mch4g0563 Mch-Chr4:3576947 Mch8g0821 Mch-Chr8:5837414 7.81E-55 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.0e-93 339.0
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 7.0e-90 327.8
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch4g0563 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.8 2.7e-53 206.1
Mch11g0147 . 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 52.2 1.3e-50 197.2
Mch10g1031 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 2.9e-76 282.3
Mch10g0804 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 2.3e-56 215.3
Mch1g1566 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 75.2 1.4e-48 189.5
Mch10g0804 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.5e-58 221.5
Mch1g1566 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 62.0 4.6e-50 194.5
Mch4g0563 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 50.4 2.9e-52 202.2
Mch8g0821 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 8.1e-47 184.1
Mch2g1076 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 4.3e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43159 PF00643 zf-B_box 3.40E-07 No_clan Mch TF