Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0563 ATGAAGATCCGTTGCGATGTCTGTGATAAAGCGGAAGCCGCTGTATTCTGCTCCGCCGATGAAGCCGCTCTCTGCCATGGCTGCGATCTCCAGGTCCACCAGGCGAACAAGCTCGCCGGCAAGCACTCCCGATTTTCGCTGCTTCAGCCGATCGTAACGGAATCTCCTATCTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCGATTCTTTGCAGAGAATGCGACATTTCAATTCATGAAGCGAACGAACATACGCAGAAGCACAGCAGATTTCTTCTCACAGGTGTGAAGCTTTCTCCGACTTGTTTTTCGTACCAAACATCTTCCTCCTCCGATGGCTGTGATGCCGGCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGCAAGAGGCCTAAAACGGCCACGAAAGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCAGCTCCGTCGACAAGTAATTACAAGGCCGAAGACGGCCAAGCGAGCGACGGCGGTTCGCTCTCGACGAGCAGCATATCGGAGTATCTGGAGACACTACCGGGATGGTGCGTGGAGGAATTTCTCGATCCTTCCGCGGCCGCCGCCAATCGTTTCTGTAAGTTTAACAGCGAAATTGTGGCATTTGAGAATCAAAATCTAGAGGACCAACACGAATCATTGGGCACCACCAGATTTGGCAACACACTGGAATTTTCAGGTAAAATTTCTCAAACTAGGTCTTGGAATGGGGTAGGAATCTCCAGGAAAACTTGTAGACGTGAAAAAATGGGGGTGGGTGATCAGATCATCAGCAGCTTCGGCTCTGAAAGTGAAACAATTCTGGTAAAATAA 855 50.06 MKIRCDVCDKAEAAVFCSADEAALCHGCDLQVHQANKLAGKHSRFSLLQPIVTESPICDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSPTCFSYQTSSSSDGCDAGMDVKTGSSHACSKRPKTATKEISSSHSAEKAAPSTSNYKAEDGQASDGGSLSTSSISEYLETLPGWCVEEFLDPSAAAANRFCKFNSEIVAFENQNLEDQHESLGTTRFGNTLEFSGKISQTRSWNGVGISRKTCRREKMGVGDQIISSFGSESETILVK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3576947 3579467 - MC04g0445 Mch4g0563 685275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0563 284 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch4g0563 284 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch4g0563 284 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 FunFam B-box zinc finger protein 21 1 98 - -
Mch4g0563 284 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Mch4g0563 284 MobiDBLite consensus disorder prediction 145 175 - -
Mch4g0563 284 CDD Bbox1_BBX-like 57 100 IPR049808 -
Mch4g0563 284 Gene3D Classic Zinc Finger 1 99 - -
Mch4g0563 284 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0147 Mch-Chr11:924436 Mch4g0563 Mch-Chr4:3576947 4.46E-57 dispersed
Mch4g0563 Mch-Chr4:3576947 Mch7g0133 Mch-Chr7:1637820 1.20E-35 dispersed
Mch8g0518 Mch-Chr8:3659387 Mch4g0563 Mch-Chr4:3576947 1.12E-09 transposed
Mch2g1076 Mch-Chr2:7253384 Mch4g0563 Mch-Chr4:3576947 1.50E-71 wgd
Mch4g0563 Mch-Chr4:3576947 Mch8g0821 Mch-Chr8:5837414 7.81E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43159 PF00643 zf-B_box 3.40E-07 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0563 - - - 0.0