Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0567 ATGGCGTCCGATTCTTCTCCGGTTAACTTCAATACAGGGCCTTCGTCCCCTGATGATTCATTCTCTAGTCCGATCGGAAACACGGTCTCGTCCCCGGGGGATGGTTCTCGCAGGAGAAGCCGTCGCCGGTCATCTACTCCTTCGGAATTTGCTACGCCGCCGCGTCGACGATCCCGATTGGCCTCATCGGAAACCTCCCCGACGGCTACGGAACCGCGCTCGCGCCGGCGAGGGGGTGGGCGGAGAGCGTCCGGAAGCGGAGCTACACCCGTGGCTGCTACGCCTTCTTCAACGGATGATGTTCTGCCGTCGTCGGAAGCGGGCGAGGGCTACGATATGGACGAGGACCATCCGACCTTTGTATGGGGTACGAATATCAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTCTTGAAGCATTTTCGTGAGCGTCAAACGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGGAAATACGCGGAGGCAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTTGATGTGGATGCGCAGGATGTGTTTAATTACGATACAGATTTATACACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGATATAGTACTGATGGAAATGGTGCCTCAAATCAACCCATTATTTGAAAAGCACGTTCAAACTCGGATTTTCAATCTCAAAACTTCTACTTCGATGAGAAATCTTAACCCATCTGACATTGAAAGGATGGTGTCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGGGAGGCAATATTTAGATGTCTCGTGTGTGGATATTACACTGACCCTGTAGCTATTGAGAGAGGACGAATAACCGAGCCCACAATATGCTTGAAGGAAGAATGTCAGGCAAGGAACTCCATGTCACTGGTTCACAACCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCAGATGAGATACCGGAAGGAGGGACACCTCATACTGTAAGCTTGTTAATGCACGACAAGCTGGTTGATTCTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACCGGGCCATGAGTGTGAGAGTTGGACCAACTCAGAGAACTGTAAAGTCATTATTCAAGACTTATATTGATTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGGCATCAGAGGATTTGATGGAAGTCGAGAGCCGGTTGGGTGGAAATGTGGATGATCTCTCTTTTGATGAAGCGAAGGTGGAAGAGTTGAGAGAGCTCTCCAAAAAGCCTGATATATATGACAGATTAACCAGGTCATTGGCACCAAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCTTTGAAATTGTCATCTGGTGCAAGCTTTCGAGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACTAGCAAGTCTCAGCTGCTCCAATACATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTTACCAAAGATCCTGAAACTGGGGAAACCGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGACAAAATGTCTGAAAACGCAAGGAGTATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCAAAGGCTGGAATTATTGCTTCCCTTAATGCAAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGCTCACGTTATAATCCTCGCCTTTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCGCTACACTTTGACAACCCTGAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGAAAGCATGTTCATCCACAATTGTCGGATGAGGCAGCTGAAGAGTTGACCAGAGGCTATGTTGAGCTGAGAAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCAGGCAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATTCGTTTCTCGGAATGGGTTCAAAAGGGTGATGTTCTTGAGGCATTCCGGCTTCTTGAAGTTGCAATGCAACAGTCTGCAACAGACCATTCTACAGGAACAATTGACATGGATCTAATCACCACGGGAGTCTCGGCGAGTGAAAGGATGCGAAGGGAGGGTCTATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCCTGGCAGAGTTATTGGATGAACTGAAGAAGCAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAACGCAGTTTCGACACTTGCGAGTGAGGGATTTGTAGCAATCCATGGTGACAGCATAAAGAGAATATAA 2538 46.57 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSPGDGSRRRSRRRSSTPSEFATPPRRRSRLASSETSPTATEPRSRRRGGGRRASGSGATPVAATPSSTDDVLPSSEAGEGYDMDEDHPTFVWGTNISVDDVKGAIIRFLKHFRERQTSQSEGDFHTEGKYAEAIKRVLEIEGDSLDVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHVQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRITEPTICLKEECQARNSMSLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDSGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMASEDLMEVESRLGGNVDDLSFDEAKVEELRELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLSSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKHVHPQLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVQKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRREGLLSATRNIIMEKMQLGGPSMRLAELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRI 845
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 3605314 3614811 + MC04g0449 Mch4g0567 685279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0567 845 MobiDBLite consensus disorder prediction 46 69 - -
Mch4g0567 845 MobiDBLite consensus disorder prediction 1 34 - -
Mch4g0567 845 FunFam DNA helicase 263 315 - -
Mch4g0567 845 Gene3D - 236 375 IPR012340 -
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 550 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 623 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 600 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 564 577 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 491 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 SMART mcm 232 749 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 Pfam MCM AAA-lid domain 661 747 IPR041562 -
Mch4g0567 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 124 819 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Mch4g0567 845 Pfam MCM P-loop domain 423 645 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Mch4g0567 845 MobiDBLite consensus disorder prediction 89 103 - -
Mch4g0567 845 Gene3D - 125 230 - -
Mch4g0567 845 Coils Coil 805 825 - -
Mch4g0567 845 Gene3D - 263 315 - -
Mch4g0567 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 761 IPR027417 -
Mch4g0567 845 Pfam MCM OB domain 236 365 IPR033762 -
Mch4g0567 845 Gene3D - 413 753 IPR027417 -
Mch4g0567 845 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 749 758 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 597 614 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 451 462 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Mch4g0567 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Mch4g0567 845 CDD MCM4 438 747 - -
Mch4g0567 845 FunFam DNA helicase 416 754 - -
Mch4g0567 845 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Mch4g0567 845 Pfam MCM N-terminal domain 135 228 IPR027925 -
Mch4g0567 845 MobiDBLite consensus disorder prediction 1 116 - -
Mch4g0567 845 Gene3D - 754 836 IPR036388 -
Mch4g0567 845 ProSiteProfiles MCM family domain profile. 435 641 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2181 Mch-Chr1:20916696 Mch4g0567 Mch-Chr4:3605314 1.62E-106 dispersed
Mch4g0567 Mch-Chr4:3605314 Mch9g0661 Mch-Chr9:4967950 1.22E-108 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0567 K02212 - csv:101211850 1507.27