Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g0706 | ATGGCTCAGGTTCAACCTCAACCTCAACCCCAAGTTCCCATCTCCGCCGCCGATCCGGCCGCCAATGGAGGGGCCAACCAGCATGTGACCACGTCGTTGTATGTCGGAGATCTTGACGTGAACGTCACCGATTCGCAGCTTTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGTTCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTGAACTTTACCCCTCTAAATGGGAATCCTATTAGGGTTATGTATTCACATCGTGACCCTAGCATGCGAAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTTTCTGCATTTGGAAACATTCTATCCTGCAAGGTTGCTACAGATCCATCCGGCCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGACAATGAGGAATCTGCCTTAAAAGCGATTGAAAAGTTGAATGGTATGCTGCTTAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAATTTCAGTGAGAAATCGAAATTTAATAATGTTTTTGTCAAGAATCTGGCGGAAACTACATCTGAAGAAGATTTGAAGAATTTGTTTGGGGAGTTTGGCCCGATCACCAGTGTTGTGGTAATGAGGGATGGGGATGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAGAATGCAGACGATGCTGCTAGGTCTGTTGATGCACTTAATGGACATAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAACATCGATTTGAGCAGAGCGTAAAAGAAGCAGCTGACAAGTACCAAGGTGCAAACTTATATGTTAAGAATCTAGATGATACCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCATTTGGAACCATTACCTCATGCAAGGTTGTTATGCGAGACCCTAATGGAATAAGTAGAGGGTCTGGTTTTGTTGCATTCTCGACTCCTGAAGAGGCTTCAAGAGCTCTTTCGGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCTCAAATGCAGCCAATGGCAATTGCATCTTCGGTTGCTCCCCGTGTGCCAATGTATCCTCCAGGTGGTCCAGGTCTTGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTCCTTCTCAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGTATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTGCTGGTGCTATTCAGCAAAACCAGCAGCCTGTTCCAATGATGCAACAGCAGATGCTACCAAGAGGACGTGTCTACCGTTACCCTCCTGGACGTGGATTGCCTGATCTCCCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCGCCACGTGATGCAGTCCACCCTCAACCAATTCCTGTGGGTGCCTTGGCTTCTGCTCTTGCTAATGCAACTTCAGACCAGCAAAGAACGATGCTGGGGGAAAATCTTTACCCACTTGTGGAACAGCTAGAGCCTGATAATGCTGCCAAGGTAACGGGCATGCTACTGGAAATGGACCAGACTGAGGTTCTGCACTTGCTCGAGTCGCCCGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTTTGAGAAGCGTTGCTCAGCAGACGGGCAATGCAGCTGATCAGTTGGCATCGCTGTCCCTGACTGACAACCTTGATTCCTAA | 1956 | 46.93 | MAQVQPQPQPQVPISAADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGFGFVQFDNEESALKAIEKLNGMLLNDKQVFVGPFLRKQERENFSEKSKFNNVFVKNLAETTSEEDLKNLFGEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKHRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVVMRDPNGISRGSGFVAFSTPEEASRALSEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAIASSVAPRVPMYPPGGPGLGQQIFYGQAPPTIIPSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQNQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATSDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4751196 | 4755735 | - | MC04g0548 | Mch4g0706 | 685418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g0706 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 210 | 287 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 554 | 631 | IPR002004 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | Gene3D | - | 1 | 120 | IPR012677 | - | |
Mch4g0706 | 651 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 32 | 627 | IPR006515 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | FunFam | Polyadenylate-binding protein | 117 | 200 | - | - | |
Mch4g0706 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 31 | 200 | IPR035979 | GO:0003676(InterPro) | |
Mch4g0706 | 651 | Gene3D | - | 121 | 192 | IPR012677 | - | |
Mch4g0706 | 651 | FunFam | Polyadenylate-binding protein | 201 | 295 | - | - | |
Mch4g0706 | 651 | Pfam | RNA recognition motif | 121 | 188 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | Pfam | RNA recognition motif | 315 | 384 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | Pfam | RNA recognition motif | 33 | 103 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | Pfam | RNA recognition motif | 212 | 280 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | FunFam | Polyadenylate-binding protein | 296 | 402 | - | - | |
Mch4g0706 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 561 | 626 | IPR002004 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | CDD | RRM2_I_PABPs | 117 | 193 | IPR045305 | - | |
Mch4g0706 | 651 | SMART | rrm1_1 | 120 | 192 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | SMART | rrm1_1 | 211 | 283 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | SMART | rrm1_1 | 314 | 387 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | SMART | rrm1_1 | 32 | 105 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | SMART | rrm2_1 | 32 | 105 | IPR003954 | GO:0003676(InterPro) | |
Mch4g0706 | 651 | SMART | rrm2_1 | 314 | 387 | IPR003954 | GO:0003676(InterPro) | |
Mch4g0706 | 651 | SMART | rrm2_1 | 211 | 283 | IPR003954 | GO:0003676(InterPro) | |
Mch4g0706 | 651 | SMART | rrm2_1 | 120 | 192 | IPR003954 | GO:0003676(InterPro) | |
Mch4g0706 | 651 | SUPERFAMILY | PABC (PABP) domain | 495 | 640 | IPR036053 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 31 | 109 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | Gene3D | - | 195 | 292 | IPR012677 | - | |
Mch4g0706 | 651 | CDD | RRM3_I_PABPs | 209 | 288 | - | - | |
Mch4g0706 | 651 | FunFam | Polyadenylate-binding protein | 550 | 632 | - | - | |
Mch4g0706 | 651 | Gene3D | - | 549 | 633 | - | - | |
Mch4g0706 | 651 | CDD | RRM1_I_PABPs | 32 | 111 | IPR034364 | - | |
Mch4g0706 | 651 | FunFam | Polyadenylate-binding protein | 17 | 116 | - | - | |
Mch4g0706 | 651 | CDD | RRM4_I_PABPs | 312 | 391 | - | - | |
Mch4g0706 | 651 | Gene3D | - | 293 | 400 | IPR012677 | - | |
Mch4g0706 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 191 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 391 | IPR000504 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | PANTHER | RNA BINDING PROTEIN | 24 | 212 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Mch4g0706 | 651 | SMART | poly_2 | 566 | 629 | IPR002004 | GO:0003723(InterPro) | |
Mch4g0706 | 651 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mch4g0706 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 210 | 395 | IPR035979 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g0706 | Mch-Chr4:4751196 | Mch4g1917 | Mch-Chr4:21769451 | 2.20E-217 | dispersed | |
Mch10g0028 | Mch-Chr10:175647 | Mch4g0706 | Mch-Chr4:4751196 | 3.73E-07 | transposed | |
Mch5g0052 | Mch-Chr5:391744 | Mch4g0706 | Mch-Chr4:4751196 | 1.98E-14 | transposed | |
Mch5g0846 | Mch-Chr5:5972537 | Mch4g0706 | Mch-Chr4:4751196 | 1.35E-31 | transposed | |
Mch5g1476 | Mch-Chr5:15811665 | Mch4g0706 | Mch-Chr4:4751196 | 5.50E-09 | transposed | |
Mch10g0486 | Mch-Chr10:3159463 | Mch4g0706 | Mch-Chr4:4751196 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g0706 | K13126 | - | csv:101223017 | 1168.68 |