Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0706 ATGGCTCAGGTTCAACCTCAACCTCAACCCCAAGTTCCCATCTCCGCCGCCGATCCGGCCGCCAATGGAGGGGCCAACCAGCATGTGACCACGTCGTTGTATGTCGGAGATCTTGACGTGAACGTCACCGATTCGCAGCTTTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGTTCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTGAACTTTACCCCTCTAAATGGGAATCCTATTAGGGTTATGTATTCACATCGTGACCCTAGCATGCGAAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTTTCTGCATTTGGAAACATTCTATCCTGCAAGGTTGCTACAGATCCATCCGGCCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGACAATGAGGAATCTGCCTTAAAAGCGATTGAAAAGTTGAATGGTATGCTGCTTAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAATTTCAGTGAGAAATCGAAATTTAATAATGTTTTTGTCAAGAATCTGGCGGAAACTACATCTGAAGAAGATTTGAAGAATTTGTTTGGGGAGTTTGGCCCGATCACCAGTGTTGTGGTAATGAGGGATGGGGATGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAGAATGCAGACGATGCTGCTAGGTCTGTTGATGCACTTAATGGACATAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAACATCGATTTGAGCAGAGCGTAAAAGAAGCAGCTGACAAGTACCAAGGTGCAAACTTATATGTTAAGAATCTAGATGATACCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCATTTGGAACCATTACCTCATGCAAGGTTGTTATGCGAGACCCTAATGGAATAAGTAGAGGGTCTGGTTTTGTTGCATTCTCGACTCCTGAAGAGGCTTCAAGAGCTCTTTCGGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCTCAAATGCAGCCAATGGCAATTGCATCTTCGGTTGCTCCCCGTGTGCCAATGTATCCTCCAGGTGGTCCAGGTCTTGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTCCTTCTCAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGTATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTGCTGGTGCTATTCAGCAAAACCAGCAGCCTGTTCCAATGATGCAACAGCAGATGCTACCAAGAGGACGTGTCTACCGTTACCCTCCTGGACGTGGATTGCCTGATCTCCCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCGCCACGTGATGCAGTCCACCCTCAACCAATTCCTGTGGGTGCCTTGGCTTCTGCTCTTGCTAATGCAACTTCAGACCAGCAAAGAACGATGCTGGGGGAAAATCTTTACCCACTTGTGGAACAGCTAGAGCCTGATAATGCTGCCAAGGTAACGGGCATGCTACTGGAAATGGACCAGACTGAGGTTCTGCACTTGCTCGAGTCGCCCGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTTTGAGAAGCGTTGCTCAGCAGACGGGCAATGCAGCTGATCAGTTGGCATCGCTGTCCCTGACTGACAACCTTGATTCCTAA 1956 46.93 MAQVQPQPQPQVPISAADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGFGFVQFDNEESALKAIEKLNGMLLNDKQVFVGPFLRKQERENFSEKSKFNNVFVKNLAETTSEEDLKNLFGEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKHRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVVMRDPNGISRGSGFVAFSTPEEASRALSEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAIASSVAPRVPMYPPGGPGLGQQIFYGQAPPTIIPSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQNQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATSDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4751196 4755735 - MC04g0548 Mch4g0706 685418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0706 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723(InterPro)
Mch4g0706 651 Gene3D - 1 120 IPR012677 -
Mch4g0706 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 627 IPR006515 GO:0003723(InterPro)
Mch4g0706 651 FunFam Polyadenylate-binding protein 117 200 - -
Mch4g0706 651 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676(InterPro)
Mch4g0706 651 Gene3D - 121 192 IPR012677 -
Mch4g0706 651 FunFam Polyadenylate-binding protein 201 295 - -
Mch4g0706 651 Pfam RNA recognition motif 121 188 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 Pfam RNA recognition motif 315 384 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 Pfam RNA recognition motif 33 103 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 Pfam RNA recognition motif 212 280 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 FunFam Polyadenylate-binding protein 296 402 - -
Mch4g0706 651 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723(InterPro)
Mch4g0706 651 CDD RRM2_I_PABPs 117 193 IPR045305 -
Mch4g0706 651 SMART rrm1_1 120 192 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 SMART rrm1_1 211 283 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 SMART rrm1_1 314 387 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 SMART rrm1_1 32 105 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 SMART rrm2_1 32 105 IPR003954 GO:0003676(InterPro)
Mch4g0706 651 SMART rrm2_1 314 387 IPR003954 GO:0003676(InterPro)
Mch4g0706 651 SMART rrm2_1 211 283 IPR003954 GO:0003676(InterPro)
Mch4g0706 651 SMART rrm2_1 120 192 IPR003954 GO:0003676(InterPro)
Mch4g0706 651 SUPERFAMILY PABC (PABP) domain 495 640 IPR036053 GO:0003723(InterPro)
Mch4g0706 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 Gene3D - 195 292 IPR012677 -
Mch4g0706 651 CDD RRM3_I_PABPs 209 288 - -
Mch4g0706 651 FunFam Polyadenylate-binding protein 550 632 - -
Mch4g0706 651 Gene3D - 549 633 - -
Mch4g0706 651 CDD RRM1_I_PABPs 32 111 IPR034364 -
Mch4g0706 651 FunFam Polyadenylate-binding protein 17 116 - -
Mch4g0706 651 CDD RRM4_I_PABPs 312 391 - -
Mch4g0706 651 Gene3D - 293 400 IPR012677 -
Mch4g0706 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723(InterPro)
Mch4g0706 651 PANTHER RNA BINDING PROTEIN 24 212 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Mch4g0706 651 SMART poly_2 566 629 IPR002004 GO:0003723(InterPro)
Mch4g0706 651 MobiDBLite consensus disorder prediction 1 23 - -
Mch4g0706 651 SUPERFAMILY RNA-binding domain, RBD 210 395 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0706 Mch-Chr4:4751196 Mch4g1917 Mch-Chr4:21769451 2.20E-217 dispersed
Mch10g0028 Mch-Chr10:175647 Mch4g0706 Mch-Chr4:4751196 3.73E-07 transposed
Mch5g0052 Mch-Chr5:391744 Mch4g0706 Mch-Chr4:4751196 1.98E-14 transposed
Mch5g0846 Mch-Chr5:5972537 Mch4g0706 Mch-Chr4:4751196 1.35E-31 transposed
Mch5g1476 Mch-Chr5:15811665 Mch4g0706 Mch-Chr4:4751196 5.50E-09 transposed
Mch10g0486 Mch-Chr10:3159463 Mch4g0706 Mch-Chr4:4751196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0706 K13126 - csv:101223017 1168.68