Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0722 ATGGATCCAAACCCTACTGATTCCCCAACACCACCTAGTGCTAATTCCTCAGAAACTAAACCTCTAGATGTGCAGCCTCAGGCTCAGGCTCAGGCTCAGGCTACTGCTACCTCTGGAATGGATAATGTAGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGCTTGAAAATTTCTCAACCGCAGTCAGCTTCACAAGATGGCTCGACTGAAAATGCTGGGAAGTCAGCTTTTGCTCGTTTTACAAGTGGCTTAAGCTTCAACTTATCTCCAAAATCTCCTGCACCTAATGATTCCTCTGATGGAACTTCTAAACCTACGCAACCTAGTTTTATGGGATCAATTACAAGAGGGTTGGTTGATTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTCAAAGCGCGTCATGCTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTAGATATGACTTATATTACCGAAAATATCATTGCTATGGGTTTCCCTGCTGGTGACTTGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAAGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCATTTGATGACCATAACTGTCCTCCAGTTCAACTGATAATATCATTTTGTCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAACGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGAACAGGCTTGATGATTTCCAGTCTTCTTCTATATCTGAAGTTCTTTCCTACTGCTGAAGAATCCATTGAATACTATAACCAGAGAAGGTGTTTTGATGGCAAAGGCCTGATTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGACCGTATTTTAACATACTTCAATGGAGAAAATCCTCCCGGCCGTAGGTGTGTCCTTCGAGGATTTCGTCTCCACAGGTGTCCATATTGGATCAGGCCTTCTATTACTGTATCCGACCATAACGGTGTTCTTTTTTCCACTAAAACACATTCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTTGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGCGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAACCGAAAAATGCTCTACACCAATGATCTTGATGGGTTTGACAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACATCACCCAATGTCGACAACACCACGAAGAAGTCGGATGAAAGCTCAGGCTCGAAACCTTCTGCAGTTGACGGGAGCAAAGTTTCTCAGAACCAAAACAGAAAATCAGGTACTCATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGCTCTTCAAAGAGCAAGAAGGAGGCAGTTGAAGGTTCAGGGACCGAAGGATCTGCTGTCAAGACGGCATCTAAATCTCAAACAAGTGGGAGTTCATCGAACGATGTTGCAAGTTTATCACACGCAACGAAGCAAGTTTCCCTGGGAGATGGTGGAGTCAAACAGACTGCTCCTGCCAGCGACCGAAAAGGAGATGGTATTGGAAGATCTGATTCCCTCCAAGATGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCAGCTGATGCTTCTGTATTTACATTTGGCGATGATGAAGACTACGAGAGTGAGTAA 1857 43.3 MDPNPTDSPTPPSANSSETKPLDVQPQAQAQAQATATSGMDNVARDAPSKLSPTGITSWAKSLKISQPQSASQDGSTENAGKSAFARFTSGLSFNLSPKSPAPNDSSDGTSKPTQPSFMGSITRGLVDSSKSAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFDRILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHSRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSKVSQNQNRKSGTHDKDDVFSDSESEGGSSKSKKEAVEGSGTEGSAVKTASKSQTSGSSSNDVASLSHATKQVSLGDGGVKQTAPASDRKGDGIGRSDSLQDVPNSESEFKAMAADASVFTFGDDEDYESE 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4880494 4886691 + MC04g0560 Mch4g0722 685434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0722 618 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 405 460 IPR035892 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 51 80 - -
Mch4g0722 618 Gene3D - 352 464 - -
Mch4g0722 618 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 135 332 - -
Mch4g0722 618 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311(InterPro)
Mch4g0722 618 MobiDBLite consensus disorder prediction 531 559 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 465 618 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 465 495 - -
Mch4g0722 618 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 137 557 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Mch4g0722 618 ProSiteProfiles C2 tensin-type domain profile. 336 463 IPR014020 -
Mch4g0722 618 CDD PTP_PTEN 160 325 IPR045101 GO:0016791(InterPro)
Mch4g0722 618 MobiDBLite consensus disorder prediction 11 42 - -
Mch4g0722 618 SMART PTEN_C2_2 334 462 IPR014020 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 1 80 - -
Mch4g0722 618 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 231 284 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 496 525 - -
Mch4g0722 618 ProSiteProfiles Phosphatase tensin-type domain profile. 150 329 IPR029023 -
Mch4g0722 618 Gene3D Protein tyrosine phosphatase superfamily 135 332 IPR029021 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 93 122 - -
Mch4g0722 618 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 264 303 IPR000387 GO:0016311(InterPro)
Mch4g0722 618 Pfam PTEN2, C2 domain 336 463 - -
Mch4g0722 618 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 163 330 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0722 K01110 - - csv:101222304 1103.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2431 Mch-Chr8:27315402 Mch4g0722 Mch-Chr4:4880494 2.08E-43 transposed
Mch1g1234 Mch-Chr1:14663349 Mch4g0722 Mch-Chr4:4880494 9.37E-248 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83