Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0722 ATGGATCCAAACCCTACTGATTCCCCAACACCACCTAGTGCTAATTCCTCAGAAACTAAACCTCTAGATGTGCAGCCTCAGGCTCAGGCTCAGGCTCAGGCTACTGCTACCTCTGGAATGGATAATGTAGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGCTTGAAAATTTCTCAACCGCAGTCAGCTTCACAAGATGGCTCGACTGAAAATGCTGGGAAGTCAGCTTTTGCTCGTTTTACAAGTGGCTTAAGCTTCAACTTATCTCCAAAATCTCCTGCACCTAATGATTCCTCTGATGGAACTTCTAAACCTACGCAACCTAGTTTTATGGGATCAATTACAAGAGGGTTGGTTGATTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTCAAAGCGCGTCATGCTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTAGATATGACTTATATTACCGAAAATATCATTGCTATGGGTTTCCCTGCTGGTGACTTGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAAGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCATTTGATGACCATAACTGTCCTCCAGTTCAACTGATAATATCATTTTGTCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAACGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGAACAGGCTTGATGATTTCCAGTCTTCTTCTATATCTGAAGTTCTTTCCTACTGCTGAAGAATCCATTGAATACTATAACCAGAGAAGGTGTTTTGATGGCAAAGGCCTGATTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGACCGTATTTTAACATACTTCAATGGAGAAAATCCTCCCGGCCGTAGGTGTGTCCTTCGAGGATTTCGTCTCCACAGGTGTCCATATTGGATCAGGCCTTCTATTACTGTATCCGACCATAACGGTGTTCTTTTTTCCACTAAAACACATTCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTTGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGCGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAACCGAAAAATGCTCTACACCAATGATCTTGATGGGTTTGACAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACATCACCCAATGTCGACAACACCACGAAGAAGTCGGATGAAAGCTCAGGCTCGAAACCTTCTGCAGTTGACGGGAGCAAAGTTTCTCAGAACCAAAACAGAAAATCAGGTACTCATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGCTCTTCAAAGAGCAAGAAGGAGGCAGTTGAAGGTTCAGGGACCGAAGGATCTGCTGTCAAGACGGCATCTAAATCTCAAACAAGTGGGAGTTCATCGAACGATGTTGCAAGTTTATCACACGCAACGAAGCAAGTTTCCCTGGGAGATGGTGGAGTCAAACAGACTGCTCCTGCCAGCGACCGAAAAGGAGATGGTATTGGAAGATCTGATTCCCTCCAAGATGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCAGCTGATGCTTCTGTATTTACATTTGGCGATGATGAAGACTACGAGAGTGAGTAA 1857 43.3 MDPNPTDSPTPPSANSSETKPLDVQPQAQAQAQATATSGMDNVARDAPSKLSPTGITSWAKSLKISQPQSASQDGSTENAGKSAFARFTSGLSFNLSPKSPAPNDSSDGTSKPTQPSFMGSITRGLVDSSKSAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFDRILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHSRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSKVSQNQNRKSGTHDKDDVFSDSESEGGSSKSKKEAVEGSGTEGSAVKTASKSQTSGSSSNDVASLSHATKQVSLGDGGVKQTAPASDRKGDGIGRSDSLQDVPNSESEFKAMAADASVFTFGDDEDYESE 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4880494 4886691 + MC04g0560 Mch4g0722 685434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0722 618 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 405 460 IPR035892 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 51 80 - -
Mch4g0722 618 Gene3D - 352 464 - -
Mch4g0722 618 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 135 332 - -
Mch4g0722 618 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311(InterPro)
Mch4g0722 618 MobiDBLite consensus disorder prediction 531 559 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 465 618 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 465 495 - -
Mch4g0722 618 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 137 557 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Mch4g0722 618 ProSiteProfiles C2 tensin-type domain profile. 336 463 IPR014020 -
Mch4g0722 618 CDD PTP_PTEN 160 325 IPR045101 GO:0016791(InterPro)
Mch4g0722 618 MobiDBLite consensus disorder prediction 11 42 - -
Mch4g0722 618 SMART PTEN_C2_2 334 462 IPR014020 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 1 80 - -
Mch4g0722 618 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 231 284 - -
Mch4g0722 618 MobiDBLite consensus disorder prediction 496 525 - -
Mch4g0722 618 ProSiteProfiles Phosphatase tensin-type domain profile. 150 329 IPR029023 -
Mch4g0722 618 Gene3D Protein tyrosine phosphatase superfamily 135 332 IPR029021 -
Mch4g0722 618 MobiDBLite consensus disorder prediction 93 122 - -
Mch4g0722 618 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 264 303 IPR000387 GO:0016311(InterPro)
Mch4g0722 618 Pfam PTEN2, C2 domain 336 463 - -
Mch4g0722 618 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 163 330 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2431 Mch-Chr8:27315402 Mch4g0722 Mch-Chr4:4880494 2.08E-43 transposed
Mch1g1234 Mch-Chr1:14663349 Mch4g0722 Mch-Chr4:4880494 9.37E-248 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0722 K01110 - csv:101222304 1103.2