Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0836 ATGACTGAATTCCCACTCCCCGCCGGAAAACTCCTCCGGCGCCGCCCCCCGCCGCCGCCGAGTCTCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCTGCTCACTTCCCCTCTCCCATGGCGATGAACTTCAGTCCCTTCTGGCCCTCAAGTCTGCCCTCCACCACAACTCAACCTCTTCGGTTTTCAACTCATGGGTGGGAGAGAGCAATGCTGTGTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGATTTGTTACTGAAATCAATCTCTCTGCCAAAAACTTATCTGGGATTCTTCCTTTTGACTCCATTTGCTCTCTGAAATCGCTGGAGAAGCTGTCTTTTGGGTCGAATCATTTGTATGGCAGGGTGAGTGATGAGTTGAGGAATTGTTCCAGGTTGAGGTATTTGGATTTGGGTCAGAATTTTTTTGCTGGTGAAGTGCCTGATTTGTCTTCTTTAGGGGGATTGAGGTACTTGAGCTTGAATAACAGTGGGTTTTCAGGGGATTTTCCATGGAAATCTCTTCACAATCTTACTGATTTGGAGTTCTTAAGCCTTGGGGACAATTCATTTGAACCAACAACTTCATTCCCAACTGAGATTCTTGAGCTTCAAAAGCTGTATTGGCTTTACCTTGCTAACTGCAGCATCCATGGAGAAATCCCACCTGGGATTGGGACCCTGTCTCTGCTTGAGAATCTTGAGCTCTCGCAAAATAAACTCACAGGTCCCATTCCATCTGACATTGTGAACCTCAAGAAGCTGTGGCAGCTGCAGCTACATGAGAATTCCTTGACCGGGAAGCTCCCAGTCGGGTTCCGGAACCTCACTGGACTGAAAAATTTTGATGCCTCAACTAATAATCTTGAAGGTGATCTGATGGAGCTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAACCGATTCTCCGGTGTGATTCCGGACGAGTTTGGGGACTTTAAAGAGCTTGTTGGACTCTCTCTTTATCAGAACAATCTCACTGGCAGCCTCCCTCAGAGGCTCGGATCTTGGGGAGCCTTCATTTTCATTGATGTTTCAGAGAACTTCCTGTCTGGTCCTATACCTCCAGACATGTGCAAGCAGGGCAGGATGAATGATCTCCTGATGCTGCAAAACAAATTCACAGGTGGAATCCCAGAAAGCTACACAAGCTGTAAATCTTTGAATCGTTTACGAGTGAACAATAATTCTCTTTCGGGTGTCGTTCCTGCTGGGATTTGGAGTCTGCCAAATCTTACCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGGCTTCAGATATTGGTAAAGCAAAAATTCTTGCCCAGTTATTCCTATCGAATAATCGGTTTTCTGGAAACTTACCGACCGAGCTTGGCGAGGTGTCATCCTTAGTCTCAATCCTGCTTGATTTGAACCAATTCGCCGGTCCAATCCCGAAAACAATTGGCAAGTTGAAGAACTTAAGCAGCCTTTCCTTGAATGACAATAAGTTTTCTGACAACATACCTAGCTCATTAGGCTCTTGCACTTCTCTTTCTACCATAAATCTAGCTAAGAATTCGTTCTCAGGGGACATTCCAGAGAGTCTTGGATATTTGCCAATTCTAAACTCCTTAAATCTATCGAACAATGAACTTTCAGGCGAAATCCCAATGAGTTTTTCGCAGTTGAGGCTAAGCAGTTTCGACCTGTCTAATAACAGGCTAATTGGCCAAGTACCTGAATCGCTAGCGATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCAGGCTTGTGTAGCGAGTCTCTCGGATATTTGAATTCATGTTCATCAACCTCTAGCTCCTCCCACCATCTCGGAAAGTTGCTATCATGCATCATTGCTGGAATTCTAGTGTTGCTCGTGTCCTTCTCGTGTTTGTTGTTCGTTAAATGGAAACGTAACGATGCCAAGCATTTGCTGAAATCCCAATTGTGGGATATGAAGCCATTCCGCGTAGTGTGCTTCACGGAAAAGGAAATCATTGATTCAATGCATTCTGATAACTTGATAGGCAAAGGAGGATCTGGAAATGTGTACAAAGTTGTACTAAGTAATGGCAAACAACTTGCCGTGAAACATATATGGCAGTCGAGCTCTAGGGATCAAACAAACTGTCGGACTAGCACAACGATGTTAACAAAAAGGAAGACCAGGTCGTCGGAATATGATGCAGAAGTGGGTACTTTGAGCTCAGTGAGACATGTCAATGTGGTGAAACTATACTGTAGCATTTCGAGCGAGGACAGTAATCTGTTGGTTTACGAGTACTTACCAAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTCGCAATTGGAGCAGCGAGGGGGCTCGAGTATTTGCATCATGGGTGTGATAGACCGGTGATTCACCGGGATGTGAAATCGAGCAACATTTTGTTGGACAGTGAATGGAAGCCTAGGATTGCAGATTTCGGGCTGGCTAAGATTCTGCAGGATGGCCGTGGGGGTGGAGATTCGTCTCATGTCATTGCCGGAACACTCGGTTATATAGCCCCTGAATATGCATACACGTGCAAGATAAACGAGAAGAGCGATGTTTACAGCTTCGGAGTAGTCTTAATGGAACTAGTAACAGGAAAGAAGCCAAATGAGCCAGAGTTTGGGGAGAACAAGGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAACGGCAATCTGAAAGAAATGGTAGATTCTAGCATCTCAGAGGCTCAGGTGGAAGATGCAGTCAAAGTGTTGAGAATCGCACTTCGCTGCACGGCTAAGATTCCATCAACGAGGCCCTCCATGAGAATGGTAGTTCACATGCTTGAGGAGGCTGAACCCTGTAACCTCATGGACATTGTTGTCAAGAAAGGATGTGAAAAGTAA 2967 45.64 MTEFPLPAGKLLRRRPPPPPSLTLFLLLLLLLCSLPLSHGDELQSLLALKSALHHNSTSSVFNSWVGESNAVCSSFHGIVCDSNGFVTEINLSAKNLSGILPFDSICSLKSLEKLSFGSNHLYGRVSDELRNCSRLRYLDLGQNFFAGEVPDLSSLGGLRYLSLNNSGFSGDFPWKSLHNLTDLEFLSLGDNSFEPTTSFPTEILELQKLYWLYLANCSIHGEIPPGIGTLSLLENLELSQNKLTGPIPSDIVNLKKLWQLQLHENSLTGKLPVGFRNLTGLKNFDASTNNLEGDLMELRFLTNLESLQLFENRFSGVIPDEFGDFKELVGLSLYQNNLTGSLPQRLGSWGAFIFIDVSENFLSGPIPPDMCKQGRMNDLLMLQNKFTGGIPESYTSCKSLNRLRVNNNSLSGVVPAGIWSLPNLTIIDLSMNQFEGPVASDIGKAKILAQLFLSNNRFSGNLPTELGEVSSLVSILLDLNQFAGPIPKTIGKLKNLSSLSLNDNKFSDNIPSSLGSCTSLSTINLAKNSFSGDIPESLGYLPILNSLNLSNNELSGEIPMSFSQLRLSSFDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSESLGYLNSCSSTSSSSHHLGKLLSCIIAGILVLLVSFSCLLFVKWKRNDAKHLLKSQLWDMKPFRVVCFTEKEIIDSMHSDNLIGKGGSGNVYKVVLSNGKQLAVKHIWQSSSRDQTNCRTSTTMLTKRKTRSSEYDAEVGTLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAIGAARGLEYLHHGCDRPVIHRDVKSSNILLDSEWKPRIADFGLAKILQDGRGGGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKKPNEPEFGENKDIVQWAHSRMRDLNGNLKEMVDSSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPCNLMDIVVKKGCEK 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5907015 5911664 - MC04g0644 Mch4g0836 685548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0836 988 FunFam Receptor-like protein kinase HSL1 304 611 - -
Mch4g0836 988 Pfam Leucine Rich Repeat 496 518 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 545 566 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 210 231 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 234 255 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 304 325 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 520 542 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 Pfam Leucine Rich Repeat 568 586 IPR001611 GO:0005515(InterPro)
Mch4g0836 988 SUPERFAMILY RNI-like 353 602 - -
Mch4g0836 988 SMART LRR_typ_2 181 207 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 255 278 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 542 565 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 302 325 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 422 446 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 109 133 IPR003591 -
Mch4g0836 988 SMART LRR_typ_2 494 518 IPR003591 -
Mch4g0836 988 FunFam Receptor-like protein kinase HAIKU2 664 773 - -
Mch4g0836 988 Gene3D Ribonuclease Inhibitor 488 613 IPR032675 -
Mch4g0836 988 Pfam Protein kinase domain 683 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0836 988 SMART serkin_6 681 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0836 988 Pfam Leucine rich repeat N-terminal domain 40 82 IPR013210 -
Mch4g0836 988 Gene3D Ribonuclease Inhibitor 300 371 IPR032675 -
Mch4g0836 988 Gene3D Transferase(Phosphotransferase) domain 1 774 981 - -
Mch4g0836 988 ProSiteProfiles Protein kinase domain profile. 681 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0836 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0836 988 SUPERFAMILY L domain-like 205 439 - -
Mch4g0836 988 SUPERFAMILY Protein kinase-like (PK-like) 662 970 IPR011009 -
Mch4g0836 988 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 299 971 IPR051716 -
Mch4g0836 988 FunFam Leucine-rich receptor-like protein kinase family protein 201 298 - -
Mch4g0836 988 FunFam Probable inactive receptor kinase RLK902 39 200 - -
Mch4g0836 988 Gene3D Phosphorylase Kinase; domain 1 665 773 - -
Mch4g0836 988 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524(InterPro)
Mch4g0836 988 Gene3D Ribonuclease Inhibitor 198 299 IPR032675 -
Mch4g0836 988 Gene3D Ribonuclease Inhibitor 41 197 IPR032675 -
Mch4g0836 988 SUPERFAMILY L domain-like 45 197 - -
Mch4g0836 988 Gene3D Ribonuclease Inhibitor 372 487 IPR032675 -
Mch4g0836 988 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 774 984 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0284 Mch-Chr4:1818025 Mch4g0836 Mch-Chr4:5907015 6.23E-93 dispersed
Mch4g0836 Mch-Chr4:5907015 Mch8g0305 Mch-Chr8:2136812 1.39E-82 dispersed
Mch4g0836 Mch-Chr4:5907015 Mch11g0743 Mch-Chr11:5014068 2.50E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77323 PF00069 Pkinase 2.40E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0836 - - - 0.0