Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0868 GTGAGGAAATTCACTGTTCTGCGGCCTCAGATCTTTGCTTTTGGAAATCCTCGTTTCTCCACCTCCGCTGAACCGTCTTCTAAGTGTAATCCTCCGAGAGTTCCAAATCTTATAGGAGGGAATTTTGTTGATTCTCAATCCTCAGCATTCATAGATGTCATAAATCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACTACAAATGAAGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCATTTCCTGCATGGCGGAATACTCCAGTTACAACTCGTCAACGAGTTATGTTGAAGCTTCAAGAACTTATTAGGCGAGATATTGACAAACTTGCTCTAAATATTACTTCAGAACAAGGAAAAACATTAAAGGATGCTCATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCTCATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGAGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAGTTGCTGTTACATGTGGGAATACTTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATTCTTGCAGAGTTAGCAATGGAAGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTCGTCAATGCTATTTGTGATGATGAAGATATTAAGGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCTAATATGGGGGCAAAAAATCATGCGATTGTCTTGCCCGATGCAAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGATTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTCGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCTAAAACTCTCAAGGTAAATTCTGGAATGGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATTGATAGTGCAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCCGGATACGAGCAGGGCAATTTTATTGGCCCTACTATATTATCAGATGTGACAGCTGACATGGAATGCTATAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCCGAAAGTTTAGAGGAGGCCATTAACATTGTTAACGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCCGGCATAGCGGCAAGGAAGTTTCAGACGGAGATTGAGGCTGGACAGGTTGGGATCAACGTTCCGATTCCAGTTCCGTTGCCCTTCTTCTCATTTACTGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGAGTTAACTTCTTCACTCAAATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAAATACAGTTAACCTTGCAATGCCAACCTCTATGAAGTCATAG 1590 43.21 VRKFTVLRPQIFAFGNPRFSTSAEPSSKCNPPRVPNLIGGNFVDSQSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRVMLKLQELIRRDIDKLALNITSEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVNSGMEPDADLGPVISKQAKERIHRLVQSGIDSAARLLLDGRNIVVPGYEQGNFIGPTILSDVTADMECYKEEIFGPVLLCMQAESLEEAINIVNGNRYGNGASIFTTSGIAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGNTVNLAMPTSMKS 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6230668 6237743 + MC04g0668 Mch4g0868 685580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0868 529 Pfam Aldehyde dehydrogenase family 42 506 IPR015590 GO:0016491(InterPro)
Mch4g0868 529 CDD ALDH_F6_MMSDH 34 510 IPR010061 GO:0004491(InterPro)
Mch4g0868 529 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 279 479 IPR016163 GO:0016620(InterPro)
Mch4g0868 529 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 526 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Mch4g0868 529 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 279 479 - -
Mch4g0868 529 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 38 285 - -
Mch4g0868 529 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 36 510 IPR010061 GO:0004491(InterPro)
Mch4g0868 529 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 304 315 IPR016160 GO:0016491(InterPro)
Mch4g0868 529 SUPERFAMILY ALDH-like 30 511 IPR016161 GO:0016491(InterPro)
Mch4g0868 529 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 38 487 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1365 Mch-Chr1:15591048 Mch4g0868 Mch-Chr4:6230668 5.25E-228 dispersed
Mch4g0868 Mch-Chr4:6230668 Mch8g0005 Mch-Chr8:44312 1.06E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0868 K00140 - csv:101204924 973.77