Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0873 ATGCCGGAATCCAATTTCCAAGACGCGATGTACGGTTCCGGAGCCATGAACAACGGTGGCCGGGATTTGGATAACATTCAGAACCGAGTGGGTGATGAAGAAGACGACGTCACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACTCCGGAGGAATAAGCGGCTCGGTCTCGGTGATGAACCGAGTTCAGGATATTGTTCCCGCGACATATGTTTCCGGCTCCGATTACAACCCATTGACTGGAAACGGCGCCGACCAGCTTACGCTGTCGTTCCGGGGGGAGGTTTATGCTTTTGATTCTGTCTCGCCTGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATACGAAATTCCTTCTGGTATTCCTGCTGTTGGAAATGTACCCATCAACCAGCAGGGTACCGATGGCCTTCCTATCAGGTCAGTTCAACCACAAAGAGCTGCTTCGTTGAGTAGGTTTAGAGAGAAGAGAAAGGAAAGGTGTTTTGAGAAGAAAATTCGGTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTTCAGATGGAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTGGATTCTGGACAAGATGATGGCATGTTGGAAACTTCATGTACTCATTGTGGAATCAGTTCAAAATCTACACCAATGATGCGTCGTGGACCAGCTGGCCCGAGGACTCTGTGCAACGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGTATTCAGGAACCCTTTGTGAAGGAGACTGAACAGAGCGATGGGGAAGCAAATGAATCCGACACTGGAATCAATGTGGATATTCTCAGTTCTAATGGTGATAAATAG 918 48.47 MPESNFQDAMYGSGAMNNGGRDLDNIQNRVGDEEDDVTGGEESIDNPQMRFEDSGGISGSVSVMNRVQDIVPATYVSGSDYNPLTGNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGNVPINQQGTDGLPIRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAISDGVGSSSVLAQTLDSGQDDGMLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQEPFVKETEQSDGEANESDTGINVDILSSNGDK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6334485 6339671 - MC04g0673 Mch4g0873 685585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0873 305 ProSiteProfiles GATA-type zinc finger domain profile. 223 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 ProSitePatterns GATA-type zinc finger domain. 224 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 SMART GATA_3 218 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 Gene3D - 217 275 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch4g0873 305 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515(InterPro)
Mch4g0873 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
Mch4g0873 305 CDD ZnF_GATA 223 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Mch4g0873 305 MobiDBLite consensus disorder prediction 287 305 - -
Mch4g0873 305 MobiDBLite consensus disorder prediction 275 305 - -
Mch4g0873 305 MobiDBLite consensus disorder prediction 1 51 - -
Mch4g0873 305 Pfam GATA zinc finger 224 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 Pfam tify domain 90 119 IPR010399 -
Mch4g0873 305 SMART tify_2 85 120 IPR010399 -
Mch4g0873 305 PANTHER GATA TRANSCRIPTION FACTOR 28 38 297 IPR045280 GO:0006355(InterPro)
Mch4g0873 305 Pfam CCT motif 152 194 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0873 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0873 Mch-Chr4:6334485 Mch8g0264 Mch-Chr8:1804679 1.36E-75 dispersed
Mch4g0873 Mch-Chr4:6334485 Mch3g1725 Mch-Chr3:18746928 4.39E-07 transposed
Mch4g0873 Mch-Chr4:6334485 Mch1g0773 Mch-Chr1:11448255 4.94E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch7g1033 . 1 180 Tify Gene Family AT4G14713 51.6 5.4e-45 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43176 PF06203 CCT 1.20E-15 CL0281 Mch TF