Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0873 ATGCCGGAATCCAATTTCCAAGACGCGATGTACGGTTCCGGAGCCATGAACAACGGTGGCCGGGATTTGGATAACATTCAGAACCGAGTGGGTGATGAAGAAGACGACGTCACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACTCCGGAGGAATAAGCGGCTCGGTCTCGGTGATGAACCGAGTTCAGGATATTGTTCCCGCGACATATGTTTCCGGCTCCGATTACAACCCATTGACTGGAAACGGCGCCGACCAGCTTACGCTGTCGTTCCGGGGGGAGGTTTATGCTTTTGATTCTGTCTCGCCTGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATACGAAATTCCTTCTGGTATTCCTGCTGTTGGAAATGTACCCATCAACCAGCAGGGTACCGATGGCCTTCCTATCAGGTCAGTTCAACCACAAAGAGCTGCTTCGTTGAGTAGGTTTAGAGAGAAGAGAAAGGAAAGGTGTTTTGAGAAGAAAATTCGGTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTTCAGATGGAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTGGATTCTGGACAAGATGATGGCATGTTGGAAACTTCATGTACTCATTGTGGAATCAGTTCAAAATCTACACCAATGATGCGTCGTGGACCAGCTGGCCCGAGGACTCTGTGCAACGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGTATTCAGGAACCCTTTGTGAAGGAGACTGAACAGAGCGATGGGGAAGCAAATGAATCCGACACTGGAATCAATGTGGATATTCTCAGTTCTAATGGTGATAAATAG 918 48.47 MPESNFQDAMYGSGAMNNGGRDLDNIQNRVGDEEDDVTGGEESIDNPQMRFEDSGGISGSVSVMNRVQDIVPATYVSGSDYNPLTGNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGNVPINQQGTDGLPIRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAISDGVGSSSVLAQTLDSGQDDGMLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQEPFVKETEQSDGEANESDTGINVDILSSNGDK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6334485 6339671 - MC04g0673 Mch4g0873 685585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0873 305 ProSiteProfiles GATA-type zinc finger domain profile. 223 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 ProSitePatterns GATA-type zinc finger domain. 224 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 SMART GATA_3 218 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 Gene3D - 217 275 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch4g0873 305 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515(InterPro)
Mch4g0873 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
Mch4g0873 305 CDD ZnF_GATA 223 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Mch4g0873 305 MobiDBLite consensus disorder prediction 287 305 - -
Mch4g0873 305 MobiDBLite consensus disorder prediction 275 305 - -
Mch4g0873 305 MobiDBLite consensus disorder prediction 1 51 - -
Mch4g0873 305 Pfam GATA zinc finger 224 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g0873 305 Pfam tify domain 90 119 IPR010399 -
Mch4g0873 305 SMART tify_2 85 120 IPR010399 -
Mch4g0873 305 PANTHER GATA TRANSCRIPTION FACTOR 28 38 297 IPR045280 GO:0006355(InterPro)
Mch4g0873 305 Pfam CCT motif 152 194 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0873 Mch-Chr4:6334485 Mch8g0264 Mch-Chr8:1804679 1.36E-75 dispersed
Mch4g0873 Mch-Chr4:6334485 Mch3g1725 Mch-Chr3:18746928 4.39E-07 transposed
Mch4g0873 Mch-Chr4:6334485 Mch1g0773 Mch-Chr1:11448255 4.94E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43176 PF06203 CCT 1.20E-15 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0873 - - - 0.0