Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g0922 ATGGAGAACATAGCGGCGCAATTGAAGAGGGGAATATCGCGGCAGTTCTCGACGGGGTCGCTACGGCGGACGCTGAGCAGGCAGTTCACGAGGCAGTCGTCGCTTGACCCGAGGAGGAACAATCTCCGCTTCAGCTTCGGGAGGCAGTCGTCGCTTGACCCCATCCGCCGATGTCCCGACGACGACAACGAGCTCTCGGTGCCGGAGAATCTGGACTCCACCATGCAGCTGCTGTTCATGGCCTGCCGAGGTGACGTCAGGGGAGTCGAGGACTTGCTCAACGACGGCACCGACGTTAACAGCATCGATTTGGATGGCCGCACTGCCCTCCATATCGCCGCCTGCGAAGGCCACGCCGACGTCGTCAAGCTCTTGCTCAGCCGTAAGGCCAATCTCGACGCCAGAGATCGCTGGGGGAGTACGGCAGCAGCAGATGCAAAATATTATGGAAATACCGAAATTTACAACATTCTGAAGGCGCGTGGAGCGAAAGTTCCGAAATTTAGGAAGACACCAATGACAGTAGCTAATCCTAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATCTCGAAGGCATGGATGTTCTTTCTGTTATCTCCAAATTCAGGCAAATTTTTTCCCTACAATAAGTTGGTGATTCATATTTCTTTGCAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTTGCAGTCAAGATTCTTGATAAAGATTGCTACTGCAACCCGGATTCTATAAACGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCTAATGTAGTTCAGTTTGTTGGAGCCGTTACCCAGAATTTGCCCATGATGATTGTTTCAGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAAAAAGGACGTCTCTCTCCGTCTAAAGCTCTAAGATTTGCCCTCGATATTGCTAGGCAGGGAATGAACTATCTTCATGAATGCAAACCGGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAGGTGGCTGGTTTTGGATTGATAAGATTGTCAAAAATTTCACCTGACAAAGCAAAGCTAGCTCAGCCAGTAATGATTGACAATTCAAACTTGTACTTAGCACCTGAGATTTACAACGATGAAATTTTTGCCAGAAGTGTCGATGCATTTTCGTTCGGTCTCATTCTATACGAGATGGTTGAGGGTATTCAGCCATTCCATCCCAAGCCTCCAGAAGAGGTTTCCAAAGCTATTTGTGTAGAAGGAAAGAGACCTCCCTTTAAGGTCAAATCAAAAAGTTATCCACCTGATCTAAAAGAGTTAATCGAGGAATGCTGGGATCGGGAACCTGTCGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGATGGTGGAAAGATACGTTCAAGCTCCCCTGGAAATAA 1506 46.35 MENIAAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNELSVPENLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLLLSRKANLDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKAWMFFLLSPNSGKFFPYNKLVIHISLQGAYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARQGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKISPDKAKLAQPVMIDNSNLYLAPEIYNDEIFARSVDAFSFGLILYEMVEGIQPFHPKPPEEVSKAICVEGKRPPFKVKSKSYPPDLKELIEECWDREPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7081844 7088627 - MC04g0708 Mch4g0922 685634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g0922 501 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Mch4g0922 501 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
Mch4g0922 501 SUPERFAMILY Protein kinase-like (PK-like) 233 479 IPR011009 -
Mch4g0922 501 FunFam Integrin-linked protein kinase family 296 495 - -
Mch4g0922 501 PIRSF ILK 218 500 - -
Mch4g0922 501 PIRSF ILK 8 205 - -
Mch4g0922 501 FunFam serine/threonine-protein kinase STY46-like 222 296 - -
Mch4g0922 501 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Mch4g0922 501 SMART serkin_6 215 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0922 501 Gene3D Transferase(Phosphotransferase) domain 1 296 495 - -
Mch4g0922 501 Pfam Protein tyrosine and serine/threonine kinase 233 478 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0922 501 Gene3D Phosphorylase Kinase; domain 1 228 295 - -
Mch4g0922 501 ProSiteProfiles Protein kinase domain profile. 204 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g0922 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g0922 501 FunFam Integrin-linked protein kinase 1 47 184 - -
Mch4g0922 501 SUPERFAMILY Ankyrin repeat 73 176 IPR036770 -
Mch4g0922 501 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Mch4g0922 501 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Mch4g0922 501 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Mch4g0922 501 Gene3D - 48 184 IPR036770 -
Mch4g0922 501 CDD STKc_MAP3K-like 234 479 - -
Mch4g0922 501 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 480 IPR051681 GO:0004674(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0922 Mch-Chr4:7081844 Mch9g2102 Mch-Chr9:21974676 7.53E-62 dispersed
Mch4g0922 Mch-Chr4:7081844 Mch1g1975 Mch-Chr1:19388249 9.81E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77326 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g0922 - - - 0.0