Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g0926 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCGGGGGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACGAAACAAATCTGATGGTGGCTTCTGGAACGCCTGCTATCACGATTCCCCCGACTCAGCCCCCGTCGAGTTTCTCTAATTCTCCACACCAGCTCGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAGCAGCTCCAGATGTTCTGGGCCAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCACAGTCTCCCCCTTGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCGGTTATATTTGCAAAGGCGTGCGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATCCATACAGAAGAGAATAAAAGGAGAACTCTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTCGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGACTCGGAATCACAAAAGCTTCTATTCCTGTAGTAGGTTCCCCTGCCGATCTTCCTTATTACTATGTCCCACCGCAGCATCCAGTGGCTGCACCTGGGATGATCATGGGAAAGCAATTAGATCAAGCAAATATGTACGGTGGCACCGCCCAACAGCCTCGACCACCGATGCCTTTCATGCCATGGCCACACACCCAACCTCAGCAGCAGCAGCAAACCCAGCAGCAAAGTGATGCATAG | 801 | 49.19 | MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYETNLMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPPQHPVAAPGMIMGKQLDQANMYGGTAQQPRPPMPFMPWPHTQPQQQQQTQQQSDA | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7158256 | 7161239 | - | MC04g0711 | Mch4g0926 | 685638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g0926 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 76 | 253 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Mch4g0926 | 266 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Mch4g0926 | 266 | MobiDBLite | consensus disorder prediction | 233 | 266 | - | - | |
| Mch4g0926 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 56 | 166 | IPR007125 | GO:0003677(InterPro) | |
| Mch4g0926 | 266 | MobiDBLite | consensus disorder prediction | 251 | 266 | - | - | |
| Mch4g0926 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982(InterPro) | |
| Mch4g0926 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982(InterPro) | |
| Mch4g0926 | 266 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Mch4g0926 | 266 | FunFam | Nuclear transcription factor Y subunit gamma | 69 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0926 | Mch-Chr4:7158256 | Mch6g0056 | Mch-Chr6:330313 | 1.68E-66 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43178 | PF00125 | Histone | 6.10E-18 | CL0012 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g0926 | K08066 | - | csv:101213813 | 387.497 |