Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1111 ATGAAGCTCAGTATTGTTGTTTTGTGGATCGTAGAGATCATCTCCATCCATGCAATTGGAGTTGTTTCCAAAACCAATGCCCCCGATGTTTCTGCACTGAATGTGATGTACACTAGTCTAAATTCACCTTCACAACTATCGGGTTGGAAATCGAGTGGGGGTGACCCATGTGGCGATTCTTGGGAAGGGATCAAATGCTCAGGATCATCCGTCACTGAAATAAGTTTGTCGGACTATGGACTGAGTGGATCAATGGGTTACCAGCTCTCGAATTTGGCATCCGTCACCAGCTTTGATTTGAGCAAGAACAATCTCAACGGCGAAATCCCGTATCAGCTTCCTCCTAATTGTGTTAACATCGATCTCTCTGAAAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGTCTGATCTTGAAACTTTAAATCTTGGACATAACAAGCTCAATAACCAATTGAGTGACATGTTTAGCAAGCTTTCTAAGCTCAAAAGGATGGATCTGTCATACAACTCACTCTCAGGAAACTTGCCTCTAAGTTTTAAGAAGCTTTCAAGCCTCAGCACACTGCACATACAGGAAAATAAATTTACAGGTTCAATCAATGTTCTTGCAGACCTTCCACTTGATGATTTAGATGTTTCAAACAACAAATTCACTGGCTGGGTTCCTGATAGCCTTGAGGACATAAATAGTTTGCAGACTGTAGGAAATTCTTGGTCGTCCGGACCAGCTCCTCCTCCTCCACCAGGATCAGCGTCCAATCCAAACAAAAACTCGGAGAAGAAGGAATCCGGCGGCGGCCACGGCGGAGTCAGCGGCATAGCCATGGCCGGAATAGCAATGGGAGTTCTTGCCGTACTTGCCATTGTTCTGGCCCTCTTCTCCAGAAGGCGATCGGCCCCTCCTTCATCCCATTATCTGGACGACGACGCCAGCACCCACCACAGATCCTTCACTCCACTCGCCTCTCAAGAACTCTCCAAAGACACAAAATCCGTCAACTCAGACGCTTCTCTGGACATCAAGGCCCTCCAGAAATCTTCCAGCAATCGTCTGCAGTCCTTCAGCGACACCCAGTTCGCCACCCGCCTCAACTCCCGCCGCAGCACCTCCGTTCGCGCTGCCGCCGTCGCCCACTCCCTGCACGATTTGCAGACCGCTACTGCCGACTTCGCCACTGCTCGCCTTCTTGGGGAGGGCACCATTGGACGTGTTTACAAGGCTAAGTATGCGGATGGCAAGGTTCTAGCTGTGAAGAAGATAGATTCGTCGGTTTTCCACGGGAGGAGATCCGAGGAATTCTCTGAAGTTGTTGCTAACATCTCCAAGCTTCACCACACCAACATCACCGAAGTCGTTGGGTTCTGTTCGGAACAGGGACACCACATGTTGATTTATGAATATTTCGTGAACGGTTCTCTTCATGGGTTTCTACATATGTCTGATGATTTCAGTAAACCTCTCACATGGAACACCAGAGTCAGGATTGCTCTGGGCACCGCACGAGCACTCGAGTACCTTCATGAGGTTTGCTTACCCTCCATAATTCACATGAATATCAAGTCTTCTAATATATTGCTTGATGCGGAGCTCAATCCTCGCCTCTCGGACTATGGTTTGGCAACTTTTTATAAGAATAGAAGCGCAAACCCGGGAGGTGGATATGATGCTCCGGAACGCTTAAAGGGTTCAAGCTACACAATCAAGACTGACACTTACAGTTTGGGAGTGGTGATGTTGGAGTTATTGACCGGCCGGATGCCTTACGACTCTGGTAAGCCGAAGGTGGAACAATGTCTAGTCCGGTGGGCCAGCCCACAACTCCACGACATCGACGCATTGGAAAAAATGGTGGACCCCGCATTGCGTGGGTTGTATCCCCCAAAGTCAGTTTCAAGGTTCGCAGATATTATAGCCCTTTGTGTCCAATCAGAGCCGGAGTTTCGGCCTCCAATGTCGGAGGTGGTTCAAGCCTTGGTAACGCTGGTCCAACGGTCCAGTATGAATGTCAGAGATGACCTTGGAACCTCTCGACGAATGGATGATTACGACTACTAA 2067 48.48 MKLSIVVLWIVEIISIHAIGVVSKTNAPDVSALNVMYTSLNSPSQLSGWKSSGGDPCGDSWEGIKCSGSSVTEISLSDYGLSGSMGYQLSNLASVTSFDLSKNNLNGEIPYQLPPNCVNIDLSENSFTGSVPYSISQMSDLETLNLGHNKLNNQLSDMFSKLSKLKRMDLSYNSLSGNLPLSFKKLSSLSTLHIQENKFTGSINVLADLPLDDLDVSNNKFTGWVPDSLEDINSLQTVGNSWSSGPAPPPPPGSASNPNKNSEKKESGGGHGGVSGIAMAGIAMGVLAVLAIVLALFSRRRSAPPSSHYLDDDASTHHRSFTPLASQELSKDTKSVNSDASLDIKALQKSSSNRLQSFSDTQFATRLNSRRSTSVRAAAVAHSLHDLQTATADFATARLLGEGTIGRVYKAKYADGKVLAVKKIDSSVFHGRRSEEFSEVVANISKLHHTNITEVVGFCSEQGHHMLIYEYFVNGSLHGFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCLPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKNRSANPGGGYDAPERLKGSSYTIKTDTYSLGVVMLELLTGRMPYDSGKPKVEQCLVRWASPQLHDIDALEKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNVRDDLGTSRRMDDYDY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11072431 11078563 + MC04g0797 Mch4g1111 685823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1111 688 Gene3D Transferase(Phosphotransferase) domain 1 472 676 - -
Mch4g1111 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Mch4g1111 688 SUPERFAMILY L domain-like 27 237 - -
Mch4g1111 688 SUPERFAMILY Protein kinase-like (PK-like) 372 662 IPR011009 -
Mch4g1111 688 ProSiteProfiles Protein kinase domain profile. 394 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1111 688 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 359 471 - -
Mch4g1111 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 472 676 - -
Mch4g1111 688 Gene3D Phosphorylase Kinase; domain 1 354 471 - -
Mch4g1111 688 MobiDBLite consensus disorder prediction 236 272 - -
Mch4g1111 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 157 668 IPR046959 -
Mch4g1111 688 Gene3D Ribonuclease Inhibitor 26 259 IPR032675 -
Mch4g1111 688 Pfam Protein kinase domain 396 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 212 230 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Coils Coil 148 168 - -
Mch4g1111 688 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1111 Mch-Chr4:11072431 Mch9g0166 Mch-Chr9:1268020 2.63E-167 dispersed
Mch4g1111 Mch-Chr4:11072431 Mch8g1013 Mch-Chr8:7183135 4.78E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77328 PF00069 Pkinase 4.90E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1111 - - - 0.0