Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1111 ATGAAGCTCAGTATTGTTGTTTTGTGGATCGTAGAGATCATCTCCATCCATGCAATTGGAGTTGTTTCCAAAACCAATGCCCCCGATGTTTCTGCACTGAATGTGATGTACACTAGTCTAAATTCACCTTCACAACTATCGGGTTGGAAATCGAGTGGGGGTGACCCATGTGGCGATTCTTGGGAAGGGATCAAATGCTCAGGATCATCCGTCACTGAAATAAGTTTGTCGGACTATGGACTGAGTGGATCAATGGGTTACCAGCTCTCGAATTTGGCATCCGTCACCAGCTTTGATTTGAGCAAGAACAATCTCAACGGCGAAATCCCGTATCAGCTTCCTCCTAATTGTGTTAACATCGATCTCTCTGAAAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGTCTGATCTTGAAACTTTAAATCTTGGACATAACAAGCTCAATAACCAATTGAGTGACATGTTTAGCAAGCTTTCTAAGCTCAAAAGGATGGATCTGTCATACAACTCACTCTCAGGAAACTTGCCTCTAAGTTTTAAGAAGCTTTCAAGCCTCAGCACACTGCACATACAGGAAAATAAATTTACAGGTTCAATCAATGTTCTTGCAGACCTTCCACTTGATGATTTAGATGTTTCAAACAACAAATTCACTGGCTGGGTTCCTGATAGCCTTGAGGACATAAATAGTTTGCAGACTGTAGGAAATTCTTGGTCGTCCGGACCAGCTCCTCCTCCTCCACCAGGATCAGCGTCCAATCCAAACAAAAACTCGGAGAAGAAGGAATCCGGCGGCGGCCACGGCGGAGTCAGCGGCATAGCCATGGCCGGAATAGCAATGGGAGTTCTTGCCGTACTTGCCATTGTTCTGGCCCTCTTCTCCAGAAGGCGATCGGCCCCTCCTTCATCCCATTATCTGGACGACGACGCCAGCACCCACCACAGATCCTTCACTCCACTCGCCTCTCAAGAACTCTCCAAAGACACAAAATCCGTCAACTCAGACGCTTCTCTGGACATCAAGGCCCTCCAGAAATCTTCCAGCAATCGTCTGCAGTCCTTCAGCGACACCCAGTTCGCCACCCGCCTCAACTCCCGCCGCAGCACCTCCGTTCGCGCTGCCGCCGTCGCCCACTCCCTGCACGATTTGCAGACCGCTACTGCCGACTTCGCCACTGCTCGCCTTCTTGGGGAGGGCACCATTGGACGTGTTTACAAGGCTAAGTATGCGGATGGCAAGGTTCTAGCTGTGAAGAAGATAGATTCGTCGGTTTTCCACGGGAGGAGATCCGAGGAATTCTCTGAAGTTGTTGCTAACATCTCCAAGCTTCACCACACCAACATCACCGAAGTCGTTGGGTTCTGTTCGGAACAGGGACACCACATGTTGATTTATGAATATTTCGTGAACGGTTCTCTTCATGGGTTTCTACATATGTCTGATGATTTCAGTAAACCTCTCACATGGAACACCAGAGTCAGGATTGCTCTGGGCACCGCACGAGCACTCGAGTACCTTCATGAGGTTTGCTTACCCTCCATAATTCACATGAATATCAAGTCTTCTAATATATTGCTTGATGCGGAGCTCAATCCTCGCCTCTCGGACTATGGTTTGGCAACTTTTTATAAGAATAGAAGCGCAAACCCGGGAGGTGGATATGATGCTCCGGAACGCTTAAAGGGTTCAAGCTACACAATCAAGACTGACACTTACAGTTTGGGAGTGGTGATGTTGGAGTTATTGACCGGCCGGATGCCTTACGACTCTGGTAAGCCGAAGGTGGAACAATGTCTAGTCCGGTGGGCCAGCCCACAACTCCACGACATCGACGCATTGGAAAAAATGGTGGACCCCGCATTGCGTGGGTTGTATCCCCCAAAGTCAGTTTCAAGGTTCGCAGATATTATAGCCCTTTGTGTCCAATCAGAGCCGGAGTTTCGGCCTCCAATGTCGGAGGTGGTTCAAGCCTTGGTAACGCTGGTCCAACGGTCCAGTATGAATGTCAGAGATGACCTTGGAACCTCTCGACGAATGGATGATTACGACTACTAA 2067 48.48 MKLSIVVLWIVEIISIHAIGVVSKTNAPDVSALNVMYTSLNSPSQLSGWKSSGGDPCGDSWEGIKCSGSSVTEISLSDYGLSGSMGYQLSNLASVTSFDLSKNNLNGEIPYQLPPNCVNIDLSENSFTGSVPYSISQMSDLETLNLGHNKLNNQLSDMFSKLSKLKRMDLSYNSLSGNLPLSFKKLSSLSTLHIQENKFTGSINVLADLPLDDLDVSNNKFTGWVPDSLEDINSLQTVGNSWSSGPAPPPPPGSASNPNKNSEKKESGGGHGGVSGIAMAGIAMGVLAVLAIVLALFSRRRSAPPSSHYLDDDASTHHRSFTPLASQELSKDTKSVNSDASLDIKALQKSSSNRLQSFSDTQFATRLNSRRSTSVRAAAVAHSLHDLQTATADFATARLLGEGTIGRVYKAKYADGKVLAVKKIDSSVFHGRRSEEFSEVVANISKLHHTNITEVVGFCSEQGHHMLIYEYFVNGSLHGFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCLPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKNRSANPGGGYDAPERLKGSSYTIKTDTYSLGVVMLELLTGRMPYDSGKPKVEQCLVRWASPQLHDIDALEKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNVRDDLGTSRRMDDYDY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11072431 11078563 + MC04g0797 Mch4g1111 685823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1111 688 Gene3D Transferase(Phosphotransferase) domain 1 472 676 - -
Mch4g1111 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Mch4g1111 688 SUPERFAMILY L domain-like 27 237 - -
Mch4g1111 688 SUPERFAMILY Protein kinase-like (PK-like) 372 662 IPR011009 -
Mch4g1111 688 ProSiteProfiles Protein kinase domain profile. 394 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1111 688 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 359 471 - -
Mch4g1111 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 472 676 - -
Mch4g1111 688 Gene3D Phosphorylase Kinase; domain 1 354 471 - -
Mch4g1111 688 MobiDBLite consensus disorder prediction 236 272 - -
Mch4g1111 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 157 668 IPR046959 -
Mch4g1111 688 Gene3D Ribonuclease Inhibitor 26 259 IPR032675 -
Mch4g1111 688 Pfam Protein kinase domain 396 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 212 230 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Mch4g1111 688 Coils Coil 148 168 - -
Mch4g1111 688 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1111 Mch-Chr4:11072431 Mch9g0166 Mch-Chr9:1268020 2.63E-167 dispersed
Mch4g1111 Mch-Chr4:11072431 Mch8g1013 Mch-Chr8:7183135 4.78E-184 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77328 PF00069 Pkinase 4.90E-41 CL0016 Mch PK