Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1238 GGTATTATTAGTGAGGTGATTTGGGATATTATGAAGGAGGAAGATCAGTGCTTTCAAGAACAGCTTCTAATGCAACAATACCAAACGACGATGATGATGCAACAAAACGGCGACGTTTTCGGAGGCAGCGGCGGCGGAGGAGGATTGATTTTTCCGGAAGTTTCTCCGATGATGTTGCCGCCGCCGTGGACGACGGTCCCCCAAGTCCACGGCGGGTTCAACCCGATCCGAGAGCACGACCCGTTCCTCCCGCCGCCAAATTCCTACGCCAGCTTCTTCAACAGGAGAAATCAAAACCATCCATCTCTACAGTTTCCTTACGATATTGGCTCCAATAATCTCGGAATCGGGCAGATGGCCGCCATGGCCGGGCTGCAGCCCGAACTGACCAAGATGACCGCTCAAGAAATCATGGACGCCAAAGCTCTTGCCGCTTCCAAAAGCCACAGCGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAACAACCATCTTGCTAAGCTACGTAGCTTGCTTCCCAGCACCACAAAAACGGACAAGGCGTCGTTGCTAGCAGAAGTAATCCAACACGTAAAAGAGCTGAAACGACAGACAACATTGATAGCCGACGTAAGTCCGGTACCGACCGAGCTCGACGAGCTATCGGTGGACGTTGACGCGTCGGACGAGGACGGGAAGTTTGTGATCAAAGCCTCACTTTGTTGCGAGGATAGGTCGGATCTTCTGCCGCAGATCATCAAAACCCTCAAGTCCCTTCACCTGAGAACTCTAAGAGCCGAGATCACCACCCTCGGCGGTCGAGTAAAGAACGTCTTATTCATCACCGGAGACGATGACTCCTCGTCCTCCGGTGACCAACAAGAACCTCAACACCACCACCAATACTGCATCACTTCTATTCAGGAAGCACTCAAGGCCGTGATGGAGAAAGTTTGTAGCGAAGATCATTCCTCCTCAGGCAGCACCAAGAGACAAAGGACTAACAACAACATTAATATCATCGAACACAGGTCTCTCTAA 1017 51.03 GIISEVIWDIMKEEDQCFQEQLLMQQYQTTMMMQQNGDVFGGSGGGGGLIFPEVSPMMLPPPWTTVPQVHGGFNPIREHDPFLPPPNSYASFFNRRNQNHPSLQFPYDIGSNNLGIGQMAAMAGLQPELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLHLRTLRAEITTLGGRVKNVLFITGDDDSSSSGDQQEPQHHHQYCITSIQEALKAVMEKVCSEDHSSSGSTKRQRTNNNINIIEHRSL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14184663 14187622 - MC04g0863 Mch4g1238 685950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1238 338 FunFam transcription factor bHLH30 139 202 - -
Mch4g1238 338 MobiDBLite consensus disorder prediction 313 338 - -
Mch4g1238 338 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983(InterPro)
Mch4g1238 338 Gene3D - 139 199 IPR036638 GO:0046983(InterPro)
Mch4g1238 338 CDD bHLH_AtAIG1_like 139 218 - -
Mch4g1238 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983(InterPro)
Mch4g1238 338 SMART finulus 150 199 IPR011598 GO:0046983(InterPro)
Mch4g1238 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 198 IPR036638 GO:0046983(InterPro)
Mch4g1238 338 MobiDBLite consensus disorder prediction 321 338 - -
Mch4g1238 338 PANTHER TRANSCRIPTION FACTOR BHLH30 122 327 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1091 Mch-Chr3:14347637 Mch4g1238 Mch-Chr4:14184663 9.05E-38 dispersed
Mch4g1238 Mch-Chr4:14184663 Mch4g2497 Mch-Chr4:25715280 1.34E-32 dispersed
Mch4g1238 Mch-Chr4:14184663 Mch9g1993 Mch-Chr9:21259412 1.73E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43184 PF00010 HLH 1.60E-12 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1238 - - - 0.0