Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1241 ATGGTGGTAGAGACCAGAGTATTGACATGGCGGAGGGGGTTCAAGTCCCTTCAGGCTCTGGCAGCTCACGGTTTTCTTTTATCCTTCACGCTTTTGGTTGCTCTCAAGCTCGACCAAGCCGTCTCCTACTCCTGGTGGATTGTATTTTCACCTCTATGGCTTTTTCATCTAGTTGCAGCAAGAGGCAGGTTTTCTCTACCTGCTCCAACCATGCCTCATGACCGTTATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAACTACTTCTTTGTATATTCTTAGAGTGCAGTAATGTTGTAAATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGCTTGCAATTTTGGTCGATAATGTCAGGATGTGTAAAGCCTTACTACCTGGAGATGAAGAAGACAATGTAAGCGACGAAGTTATATGGGAAACACTTCCTCACTTCTGGGTCTCAATTTCCATGGTTTTCTTCATTGCTGCAACCCTGTTCACGCTTCTAAAGCTATGTGGCGATGTAGCAGCTTTGGGCTGGTGGGATTTATTTATAAATTTCTGTATAGCTGAGTGCTTTGCATTTCTTGTTTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTCATTAGAGAATCAAGTTCATCTTCGCTGACTATTAGATACCTTGACTGGGGTAGAGGTGTGGTGGTTTCTTCTGACGAGGATCGGCACCAAGTAAGAGTTTGTAACCTACAGGATATTGGTGGACACATCATGAAGGTTCCTCTTATCATTTTCCAAATCCTGCTTTTTATGCGCTTAGAGGGAACCCCAAGGAGTTCTTCATATATTCCTTGTCTCGCTCTGTTCTCTCCTCTTTTCTTACTGCAAGGAGTGGGTTTCATATTTGCAGCATATAGATCAATGGAAAAAATTTTAATTTTATTGTTTGGTGCTCCTACTTCTGTAAGATACCTTGACCTAAGATCAAAGGCTCGTGAACTTTTAGGATTCATGCATCATGGATCGAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTATTCTGGAGCTTCTGGGTACGATACTTTCACACCAGAGAGTGTAAAGAAAATGACCAAATCCAAACTCGTTGATGAGATATGGAGATTACAAGCTGCATTAAACCAGCAGACAGAAGTTACGAAATTCAGCCGACAGGAGCATGAAAAAATTCTTAATGAAAAGATTCTTTGCAGAATATGCTTTGATGAAGATATTGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTCTGCAGCACTTGCTGTGAGAAGTGTAATCGATGCCCAATCTGTCGGGAATCTATCGAAGAACGACTGCCTGTAAATGATGTTTGGTAG 1407 42.0 MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWWIVFSPLWLFHLVAARGRFSLPAPTMPHDRYWAPWHAVMATPLLVAFELLLCIFLECSNVVNLKIVFVPLMIFELAILVDNVRMCKALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLCGDVAALGWWDLFINFCIAECFAFLVCTKWYNPMIHRHSLIRESSSSSLTIRYLDWGRGVVVSSDEDRHQVRVCNLQDIGGHIMKVPLIIFQILLFMRLEGTPRSSSYIPCLALFSPLFLLQGVGFIFAAYRSMEKILILLFGAPTSVRYLDLRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYYSGASGYDTFTPESVKKMTKSKLVDEIWRLQAALNQQTEVTKFSRQEHEKILNEKILCRICFDEDIDMVLLPCRHHILCSTCCEKCNRCPICRESIEERLPVNDVW 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14349404 14360785 + MC04g0865 Mch4g1241 685953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1241 468 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Mch4g1241 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
Mch4g1241 468 SUPERFAMILY RING/U-box 411 462 - -
Mch4g1241 468 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Mch4g1241 468 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 9 467 - -
Mch4g1241 468 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1241 Mch-Chr4:14349404 Mch6g0359 Mch-Chr6:2389051 1.62E-229 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1241 - - - 0.0