Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1324 ATGCAGAGCTTTGAGAACCCAGAACAGTTTTACGCCCATTCTTCTTCCATCTTCCTCCGGGGAGATGAGAGTGGGGGAATCCATAGCCATCATACGCGTTTTCTTCCGGATATTGAGGAGCTTCAACAATCCGCTGCTTTTCATCACCATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACGCCGGTGCTCTTCCCATCCACCTACCGTACGCGAGCTCGGATTTGGCGTCATCAGGAACAGGGTATTTAGACACAGGGCAGCAATTGATGCGGCTGAAGAGGGTGGCTCCGCCGCATACGACGGCGGTTACGGTGGCGGCTGCGTCGTCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACCGACGAGAGAAACCAGTTTCAGGGAGCTGCAAATGGAGCTCTCATGGCGGTGGACTCTCTGGATCACTCTAAAATGAAATCTGCAGATCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGATTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACTGAGGCTTACGCAGCTAGAGCAGGAGCTTCATCGAGCGCGCCAACAGGGCATTTTTTTGGCTACTGGGGCTGGAGACCATTGTTTATCAATGGCAGGGAATGGGGCCTTGGCATTTGATCTTGACTATGCACGGTGGCTCGATGAGCATCAGCGGCTGATCAATGATTTGAGAACATCTGCAAATTCTCAGATGGGCGACGACGAGTTGCGGTTTCTTGTCGATGGGGTGATGGCACATTACGATGAACTCTTCAGGCTGAAGAGGGTAGGTGCCAAGGCCGACGTATTCCACATTCTTTCAGGCATGTGGAAGACACCAGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAACTTCTAAAGATAGTTGGGAACCATTTGGAGCCTTTAACAGATCAGCAGTTGATGGGTATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCCTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCGGGAAATGTTGCGGATTACATGGGCCAAATGGCGATTGCGATGAGCAAGCTTACGACGCTTGAGAACTTTCTCCACCAGGCTGACCTTCTAAGGCAGCAAACACTCCAACAAATGCATAGGATATTAACTACTCGTCAAGCTGCACGAGCGCTCCTCGTCATCAGTGATTACATTTCGCGTCTTCGAGCTCTCAGTTCTCTATGGTTGGCACGTCCGAGAGACTGA 1389 50.32 MQSFENPEQFYAHSSSIFLRGDESGGIHSHHTRFLPDIEELQQSAAFHHHDAVDLSPSSVFGLKSTHAGALPIHLPYASSDLASSGTGYLDTGQQLMRLKRVAPPHTTAVTVAAASSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAANGALMAVDSLDHSKMKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLTQLEQELHRARQQGIFLATGAGDHCLSMAGNGALAFDLDYARWLDEHQRLINDLRTSANSQMGDDELRFLVDGVMAHYDELFRLKRVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16395214 16402148 - MC04g0903 Mch4g1324 686036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1324 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1324 462 MobiDBLite consensus disorder prediction 124 145 - -
Mch4g1324 462 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1324 462 ProSiteProfiles DOG1 domain profile. 243 459 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch4g1324 462 PANTHER TRANSCRIPTION FACTOR TGA9 133 462 - -
Mch4g1324 462 Coils Coil 196 223 - -
Mch4g1324 462 SMART brlzneu 173 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1324 462 Pfam Seed dormancy control 261 334 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch4g1324 462 FunFam BZIP family transcription factor 176 225 - -
Mch4g1324 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1324 462 CDD bZIP_HBP1b-like 177 229 - -
Mch4g1324 462 Gene3D - 176 228 - -
Mch4g1324 462 Pfam bZIP transcription factor 176 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1324 Mch-Chr4:16395214 Mch5g1294 Mch-Chr5:13803086 7.41E-151 dispersed
Mch4g1324 Mch-Chr4:16395214 Mch3g0661 Mch-Chr3:11100891 3.83E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43188 PF14144 DOG1 1.90E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1324 K14431 - csv:101210308 785.023