Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1328 ATGATTCGCTCCGACAAAATCCAAGAAATTGCATCCAAAATGGGCTTCTCCCTCTCCGATTACGCCGAATCTCTCGAGCACGAGCGCCGGAAAGTTCTCATGTTCCAGCGCGAGCTCCCTCTCTGCTTGGACCTCGTCACCCAAGCCATTGATTATTGCAGGCAGCAGCTGTCGGAGACGGCGACGACGACGGAGAATCGCCAATCGGAGTGCTCCGACCAGACTTCCAGCGAGATGGGGATGGGGATGGGGCCTGTTCTGGAGGAGTTTATTCCGATAAACAAAAATGGGGTTTCTGATTTTGAACAGGAACAGGCACGGGAAATTGAAAAGGAGAAGAGTAGTGGGTCTGATCAAAACAATTTGGGTCCGTCGGATTGGCTCAGATCTGCTCAGCTTTGGAATCAATCCTCGGATCCTCCTCCCCTGAATCAGGGCCCGCCGGAGAAGACGGCCGTCGTTGAGGTGAAGAGAAATGGGGGTGCTTTCCGGCCGTTTCAGAAGGAGAAGACGGGAGGAGGAGGAGGGGCGTCGTCGTCTTCTACTCCGGCGGCGGCGACGAGCTCGACGGCGGAGACGGAGTCCGGCGGTGGGAGCAGCAGACGGGAAGAGAAAGAGGCGCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCACGCGCTTCAGCAGCTCGGCGGCTCCCACGTGGCCACACCGAAGCAAATCAGAGAGCTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTGCACACGAGACGGCCGAGTCCGACGATTCACAACAGCGAGAGCGCCCAGGCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTCCCGGCGGCGGAGTACGCCGCCGTGGCCACCACCACTTCATCCGGAGAAGCGGTCAGCGTCGCCGCCACAAGTAATGGAATTTATGCACCGGTGGTGGCCGCCGCGCCGCCGCAGCCATTGGCCAATACAGTACAAAGACCGAAGGCGAAACTTTGCTGCGGTCAATCGCCGTCCGCCGCCGTCGCCGCCGCCGCCGCCCAATGTAATTCTCCTGCTACATCTTCCTCCACCCACACGTCTTCGCCTTCACCTGCTTCTCGAGCCTTGTAA 1152 58.59 MIRSDKIQEIASKMGFSLSDYAESLEHERRKVLMFQRELPLCLDLVTQAIDYCRQQLSETATTTENRQSECSDQTSSEMGMGMGPVLEEFIPINKNGVSDFEQEQAREIEKEKSSGSDQNNLGPSDWLRSAQLWNQSSDPPPLNQGPPEKTAVVEVKRNGGAFRPFQKEKTGGGGGASSSSTPAAATSSTAETESGGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNSESAQAPQFLVVGGIWVPAAEYAAVATTTSSGEAVSVAATSNGIYAPVVAAAPPQPLANTVQRPKAKLCCGQSPSAAVAAAAAQCNSPATSSSTHTSSPSPASRAL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16489325 16492221 - MC04g0906 Mch4g1328 686040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1328 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 336 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1328 383 Gene3D - 211 269 - -
Mch4g1328 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677(InterPro)
Mch4g1328 383 MobiDBLite consensus disorder prediction 173 196 - -
Mch4g1328 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Mch4g1328 383 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Mch4g1328 383 MobiDBLite consensus disorder prediction 162 216 - -
Mch4g1328 383 MobiDBLite consensus disorder prediction 197 216 - -
Mch4g1328 383 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Mch4g1328 383 MobiDBLite consensus disorder prediction 362 383 - -
Mch4g1328 383 FunFam Myb family transcription factor 211 269 - -
Mch4g1328 383 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1328 Mch-Chr4:16489325 Mch8g3114 Mch-Chr8:33492882 6.22E-47 dispersed
Mch4g1328 Mch-Chr4:16489325 Mch9g1987 Mch-Chr9:21209727 4.76E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43189 PF00249 Myb_DNA-binding 1.70E-06 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1328 - - - 0.0