Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1336 TTCAATCAAAGCCGTCCATTTCTATCTCTACAAATTAACCAGAACACAAGAAAGAACAGTACATTTCCAAAAACACATCAGCCTTTGTGCTTTGAGTTCTTTGGAAGGTCTCTCCAATGGCGGCTTCTTGCAGTACTTGATTTGGTCTACAAATACAAACCCTTCGAAAAGCATCTTGGAGACATGAGCTTCAATTCAGAGATGTTAAGCAAATCTTTTACAGCGGAGAGCTCCAATGGAAGTGATCACCAAGGAACAATCTCCATTAATCCTTTTTTCACTGAGGGATTTTGCCATTTTAATGAAATCCCAAGCTCTGTTCCACATGCTCTTTGCTCCTCAAGATGTGCAAATAATTCTTCATTTCCTCCAGTTAACACACAAGATTCCAAGAGCTTGGGAGGAACAAAGAGGAAAAGAGAAAGTGAAAGGGATGAAGAGAAGCAAAGAGAAGTCATCCATGTGAGAGCAAAAAGAGGCCAAGCTACTGACAGTCACAGTTTAGCAGAAAGGGTCAGAAGAGAGAAAATAAATCAGAGGTTGAGATTCTTACAAGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTAATGTTGGATGTGATAATAAACTACATCCAATCTTTGGAGAATCAGATCGAGTTCCTCTCCATGAAGCTTTCAACTGCAAGTCGCTACTATGATTTCAACAACACCACTGAAACTGATGGAATTGAGATAATGCAGGCAACAAATGGGTATGATGACATGCAAGAAATGGAAAGGATTGTACTTGGAGAAGAAGGGTATGGAGGATGCTCTTACCTCCACCCTACTTTGTCACCTCTCTAA 837 40.62 FNQSRPFLSLQINQNTRKNSTFPKTHQPLCFEFFGRSLQWRLLAVLDLVYKYKPFEKHLGDMSFNSEMLSKSFTAESSNGSDHQGTISINPFFTEGFCHFNEIPSSVPHALCSSRCANNSSFPPVNTQDSKSLGGTKRKRESERDEEKQREVIHVRAKRGQATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLENQIEFLSMKLSTASRYYDFNNTTETDGIEIMQATNGYDDMQEMERIVLGEEGYGGCSYLHPTLSPL 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16629400 16633189 - MC04g0911 Mch4g1336 686048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1336 278 MobiDBLite consensus disorder prediction 133 171 - -
Mch4g1336 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 113 235 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch4g1336 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 230 IPR036638 GO:0046983(InterPro)
Mch4g1336 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983(InterPro)
Mch4g1336 278 Gene3D - 158 230 IPR036638 GO:0046983(InterPro)
Mch4g1336 278 SMART finulus 167 217 IPR011598 GO:0046983(InterPro)
Mch4g1336 278 CDD bHLH_AtBPE_like 151 235 - -
Mch4g1336 278 MobiDBLite consensus disorder prediction 123 171 - -
Mch4g1336 278 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1629 Mch-Chr3:18086513 Mch4g1336 Mch-Chr4:16629400 3.97E-44 dispersed
Mch4g1336 Mch-Chr4:16629400 Mch8g1269 Mch-Chr8:9196030 5.75E-35 dispersed
Mch4g1336 Mch-Chr4:16629400 Mch6g0383 Mch-Chr6:2538331 1.04E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43190 PF00010 HLH 2.90E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1336 - - - 0.0