Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1352 ATGAGTGGCGGTGGCAGTGGCAGTGGCAGTGGTGCTTCTCCAAGCACCAGAGATTTGATCTGCCACGCCGGCGCTGGTGCTGCTGCAGGTGCTATAGCTGCAACGTTCGTCTGCCCGTTAGACGTGATCAAGACGAGGCTGCAAGTGCACGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCGGAAGGTTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGATAATGGTCAACTCTCATTTGGTGCAAATATGGTTGCTGCTGCTGGCGCTGGGGCATGTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAAGAAGGAATCCGTGGGCTTTACAGTGGTATCGTCCCTTCACTGGCCGGGATAAGTCATGTTGCAATCCAATTTCCAGCTTATGAAAAGCTCAAATCGTATATGGCAAAAAGAAATAACACAACCATTGAAAAGCTAAGTCCAGTACATTTAGCTATTGCCTCCTCATTGTCAAAAATTACAGCCTCAGTAACAACTTACCCGCATGAGGTAGTTCGCTCCCGGCTGCAAGAGCAAGGCCAAGCCAGAAATGTTGCCGTTCAATACTCAGGAGTCATGGACTGTATCAAAAAGGTTTTCCAAAAGGAAGGTTTTGCTGGCTTTTACAGGGGTTGCACGACAAATTTGTTGCGAACAACTCCGTCAGCTGTAATAACTTTCACCAGCTATGAGATGATACATAGGTTCATGCTGCAAGTTATACTTCCAGGCGAGGAGAAATACTCCGAAACTCGTACGAATTCAGATGGCCATGTGAAGGCCCAAAAAGCGAGCGGAGGCAATTTAAAGGAAGATAGTGATTCCAACATACAGCAATCACAACCCCAACCAAGTAAGCAAACTAGAACCCCTTTGGGGAAAAAAGAACAGTTAGCATCTAGACACTGA 1119 46.47 MSGGGSGSGSGASPSTRDLICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDNGQLSFGANMVAAAGAGACTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGIVPSLAGISHVAIQFPAYEKLKSYMAKRNNTTIEKLSPVHLAIASSLSKITASVTTYPHEVVRSRLQEQGQARNVAVQYSGVMDCIKKVFQKEGFAGFYRGCTTNLLRTTPSAVITFTSYEMIHRFMLQVILPGEEKYSETRTNSDGHVKAQKASGGNLKEDSDSNIQQSQPQPSKQTRTPLGKKEQLASRH 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16895790 16900515 + MC04g0923 Mch4g1352 686064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1352 372 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 18 307 - -
Mch4g1352 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 306 IPR018108 -
Mch4g1352 372 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 16 321 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Mch4g1352 372 MobiDBLite consensus disorder prediction 319 372 - -
Mch4g1352 372 Gene3D Mitochondrial carrier domain 7 111 IPR023395 -
Mch4g1352 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Mch4g1352 372 Gene3D Mitochondrial carrier domain 112 311 IPR023395 -
Mch4g1352 372 SUPERFAMILY Mitochondrial carrier 17 302 IPR023395 -
Mch4g1352 372 Pfam Mitochondrial carrier protein 215 308 IPR018108 -
Mch4g1352 372 Pfam Mitochondrial carrier protein 20 109 IPR018108 -
Mch4g1352 372 Pfam Mitochondrial carrier protein 115 208 IPR018108 -
Mch4g1352 372 PRINTS Mitochondrial carrier protein signature 22 35 IPR002067 GO:0055085(InterPro)
Mch4g1352 372 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085(InterPro)
Mch4g1352 372 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085(InterPro)
Mch4g1352 372 PRINTS Mitochondrial carrier protein signature 35 49 IPR002067 GO:0055085(InterPro)
Mch4g1352 372 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085(InterPro)
Mch4g1352 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 106 IPR018108 -
Mch4g1352 372 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1545 Mch-Chr1:16775569 Mch4g1352 Mch-Chr4:16895790 1.34E-57 dispersed
Mch4g1352 Mch-Chr4:16895790 Mch9g0693 Mch-Chr9:5205884 3.01E-143 dispersed
Mch4g1352 Mch-Chr4:16895790 Mch8g0448 Mch-Chr8:3201492 9.13E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1352 K15115 - csv:101216902 598.586