Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1364 GGTTCTCTTCCCTCTTCTCTTGGGGCTCTTTCTGGGCTTCGCCATCTGAATTTGAGGAACAATAGGCTTTATGGGAACTTGCCCTTTCAGCTCTTCTCGGCTCAAGGGCTTCAGAGTTTGGTTCTTTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGGAAGCTTAAGTACCTTCAAACTCTGGATTTGTCTCAAAATTTCTTCAATGGGTCATTACCCACTTCCATTATTCAATGCAAGAGACTTAGAACCCTTGATATTAGGCAGAATAACTTCTCTGGTTCACTGCCTCATGGGTTTGGAACCAGTTTGAGTTCTTTGGAGAAACTGGATCTTTCGTTTAATAAGTTTAGTGGTTCTCTTTCTAGTGATTTGGGGAATTTGTCTAGCTTACAGGGCACTTTTGACTTGTCTTATAATCTATTTTCTGGTCTAATTCCAGCTAGCCTTGGAAATCTACCTGAAAAGGTTTATATTGATCTTAGCCATAACAATTTAAGTGGTCCAATACCCCAAACTGGTGCTCTGATGAACAGAGGACCCACTGCTTTTGTTGGGAATCCTGGGCTCTGTGGTTCCCCTTTGAAGAACTCATGTTCTTCAGAAGAAACTCTTAGTGCTAGCTCACCGTCCTTGCTTCCGTTTCTCCCGGACGATAATTTGCCCGGGATTTCTGGTGAAAGTGCTAAGAAATCCAGGGGATTGAGTAAGAGTTCTGTTATTGCTATAGTACTTGGTGATGTGGTTGGCATATGCCTAGTAGCATTTGATCTTGATGAACTTCTCAAGGCCACAGCCTTTGTTCTTGGCAAGAGTGGGATTGGGATAGTGTACAAAGTGGTGCTCGAAGACGCGGTTACGTTGGCCGTTCGACGATTGGGCGAAGGCGGTTCTCAGAGGTTCAAGGAGTTTCAAACCGAAGTAGAAGCTATAGCAAAGCTAAGGCACCCAAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTCCTCATTTATGATTTCATACCCAATGGAAACCTTGCCCTTGCCATTCATGGAAAGCCAGGAACGGTAGCTTTCACGCCGTTATCATGGTCCACTCGGTTAAAGATCATTGAAGGAGTTGCCAAAGGGATGGTCTATCTCCATGAATTTAGCCCCAAGAAGTATGTTCATGGAGATTTGAAACCCAACAACATACTACTCAGCCAGAAGATGGAAGCCACAATTTCTGACTTCGGCCTTGCTCGACTGGCGAATATCGCAGGAGGAACCCCAACCTCACGATCAGGTCGAATGGCATCCGAGAAACCGAAGACCGCCGACACCATTTGCAGTTCATCATCCAACACAGGAACAGGAACTTGTTATCAAGCCCCTGAATCACTCAAAGCCTTGATGAAACCATCCCAAAAATGGGATGTCTACTCATATGGTGTGATCTTACTAGAAATGATCACAGGAAGATTCCCAATAATCCAAATGGGATCTTCCTCTGAAATGGATCTTGTCCATTGGATTCAACTCTGCATTGAACAACAGAAGCCTCTTTCAGAAGTCATAGATCCATACTTAGTTCAAGATGTTGCATATGAAGAAGAAGAGGTGATATCTGTACTAAAAATTGCTATGGCTTGTGTCCATGGAAGCCCTGAAAGGAGACCTCCAATGAGACACATCTCCGACGCCCTCGAAAGGGTATCGTCGTTGGCGTCGAGGAACTAA 1725 44.41 GSLPSSLGALSGLRHLNLRNNRLYGNLPFQLFSAQGLQSLVLYGNSFSGSVPNGIGKLKYLQTLDLSQNFFNGSLPTSIIQCKRLRTLDIRQNNFSGSLPHGFGTSLSSLEKLDLSFNKFSGSLSSDLGNLSSLQGTFDLSYNLFSGLIPASLGNLPEKVYIDLSHNNLSGPIPQTGALMNRGPTAFVGNPGLCGSPLKNSCSSEETLSASSPSLLPFLPDDNLPGISGESAKKSRGLSKSSVIAIVLGDVVGICLVAFDLDELLKATAFVLGKSGIGIVYKVVLEDAVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHPNLVTLRAYYWSVDEKLLIYDFIPNGNLALAIHGKPGTVAFTPLSWSTRLKIIEGVAKGMVYLHEFSPKKYVHGDLKPNNILLSQKMEATISDFGLARLANIAGGTPTSRSGRMASEKPKTADTICSSSSNTGTGTCYQAPESLKALMKPSQKWDVYSYGVILLEMITGRFPIIQMGSSSEMDLVHWIQLCIEQQKPLSEVIDPYLVQDVAYEEEEVISVLKIAMACVHGSPERRPPMRHISDALERVSSLASRN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17006297 17008726 + MC04g0930 Mch4g1364 686076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1364 574 FunFam Leucine-rich repeat receptor-like protein kinase 109 204 - -
Mch4g1364 574 Pfam Protein kinase domain 272 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1364 574 SUPERFAMILY Protein kinase-like (PK-like) 271 564 IPR011009 -
Mch4g1364 574 SUPERFAMILY L domain-like 3 198 - -
Mch4g1364 574 SMART LRR_typ_2 107 131 IPR003591 -
Mch4g1364 574 SMART LRR_typ_2 58 82 IPR003591 -
Mch4g1364 574 SMART LRR_typ_2 10 34 IPR003591 -
Mch4g1364 574 PANTHER OS05G0588300 PROTEIN 2 100 IPR050994 -
Mch4g1364 574 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 4 99 - -
Mch4g1364 574 CDD STKc_IRAK 272 566 - -
Mch4g1364 574 SMART serkin_6 271 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 37 58 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 13 31 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 84 104 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 61 81 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 138 156 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 Pfam Leucine Rich Repeat 161 175 IPR001611 GO:0005515(InterPro)
Mch4g1364 574 MobiDBLite consensus disorder prediction 426 446 - -
Mch4g1364 574 Gene3D Ribonuclease Inhibitor 1 210 IPR032675 -
Mch4g1364 574 Gene3D Transferase(Phosphotransferase) domain 1 342 573 - -
Mch4g1364 574 Gene3D Phosphorylase Kinase; domain 1 239 341 - -
Mch4g1364 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1364 574 ProSiteProfiles Protein kinase domain profile. 266 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1270 Mch-Chr2:8825039 Mch4g1364 Mch-Chr4:17006297 3.17E-80 dispersed
Mch4g1364 Mch-Chr4:17006297 Mch4g2621 Mch-Chr4:26410952 1.10E-113 dispersed
Mch9g2356 Mch-Chr9:23523897 Mch4g1364 Mch-Chr4:17006297 2.97E-120 transposed
Mch4g1364 Mch-Chr4:17006297 Mch9g1932 Mch-Chr9:20819970 1.82E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77330 PF00069 Pkinase 1.50E-31 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1364 - - - 0.0