Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1391 ATGTCCCTTCATCTCAGTAATCCAATTCAACTCCAAATATTCCCCCGCCGGAATGGATTCAGGGCCAAGTCTCAGCCATCGGCGGCGACGTCGAGCGTCTCCTGCTCCGCCATTAATCGCTATTCCGCCGGATGTAAAAGGCAGTATACAAGTGTGATGATAGTACCGACGGGCGTAGGCGCCGCCATTGGTGGATATGCGGGTGATGCTCTGCCAGTTGCTCGCGCTCTCGCCTCCGTCGTCGACTGCCTTATCGCTCACCCTAACATACTTAATGCAGCAATGCTTTACTGGCCAATGCACAATGTGCTTTATGTTGAAGGCTATGCACTCGATCGGTTTGCAGAAGGTTTATGGGCACTAAAACCTGTTCACCAGAATCGGATAGGATTGGTTCTTGATGCTGGAATTGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAGTATGTTGTCACAGAGACACCTTTAGTGGTAGAGAAATGGATTGATCCAAAAACTGGGAAATCAACTGGGCGGATTCGACACCCTGCTTCACTACTGAGCGCTGTGCAGACATTAATAAACCGGTCAAAGGTGAATGCTGTTGCTGTTGTTGGACGATTCCCAGATGATGACGTTGAAGAGACAGATAATTATCGACAAGGGATGGGAGTTGATGCTTTGGCAGGGGTTGAGGCTGTAATTAGCCATCTTGTGGTGAAGGAGTTCCAGGTTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCAAATCTCTATCTCCAAAATCAGCAGCTGAGGAGTTAGGATACACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAGTGCTGAATCATTGTGGAAGGACTGCATATTGGCAAATGATGTTGATAGTGTCATTCTACCGATAGATGCTTGTGGAGGCGATGGCGCTCTTGCTTTTGCCAGAAGCAACCAATATAAGCCACTTATTATTGCGGTTGAGGAAAATGAAACAGTTCTCAGCGATACTCCGGACTCACTTGGCATTGATGTGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTATAGCAGCTCACAAGGCAGGAATTGATCCCTATTCCCTACGAAGAAATGGAATCAACAACACCAAGTGCCTTTCCACTACGGCTCCTAATGGTTACCCTATTTCAAGTGCCCCTACGATTCAATTGAGGTATATGATAATGATACTTGTGCAGCATGATTATAATGTTATTTCATCCAACCCAAAAGTTATCATTCGAGTATTTGAGCTAGCTTACGTGAACATGAGCAACGAAGTCGTCGGCGACGGCCGGCGGCGAGCCACAGCGCTGCAATTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGCCCATCGCCGGCGCCGGAGACGTGATGCAAAAGGACTGCACCGATCTCATCCGTCGGATCGCGCTCCTGATTCATCTGGCGGAGGAGATCATGAACTTCCGCCGCGGCGGCGACAATTTGGCGGAATTGAATGAGTCTGGTTCTTCTTCTTCTTGTTCTCTGGATTGCCTTTCGGAAGTGGTCGGAGCCATTCAGGCGGCGAAGCGCCTTCTCTACGCCGCTTTGACTTTCTCTGGAAACGACGACGCTTCTGCGGCTTCGACTGATGGAGCTACCAAAAAATTGGTTTACCAATTTCAGTATGTGACAAACAGATTGCAAAATGCACTTGCAAATTTGCCATACGACCACTTTTGCATCTCAGATGAAGTTCAGGAACAGGTTGATTTGGTTAGAGCTCAGTTGAGGAGAGCAGAAAAGAAGTATGAGTCCATGTCTGAACTTGCAAACAAGAAGCTTCATTCTCAAGGCTCTGTAAAATGGAAGGTCAACAATGATGTTACGAGCATGTCTAGTGTTGATTATGAAGTTCCCGAGTCGCAGCATCGTCCCCAGAACCGTGACTATCAGGTCGGTTTCGATCCGGAGGAGCCGAAGGCCTCGGATTTGTGTATGGATGAGTGTTCAAGTGTTGTTCAATCTGATATGGAAGATGTTCAAGCCACCAAGAGCCAGGAGGAGGTTGAGAAGTCTGATGAAATTATGATTCCTGAGAACTTCTTGTGCCCCATCTCCTTTGAATTGATGGTAGATCCCGTCATCATCTCGACAGGACAGACCTATGAGAGATCCAATATACAGAGGTGGATAGACAAAGGGAACAAAACTTGTCCAAAAACTCAGGAGCAGCTCCAAGCTTTGATCCTCACTCCAAATTTTCTCATGAAACAACTGATCTCTGAATGGTGCCAAGAACACAATGTCAAGCTAGAGGAAGGATTAACCACCAGAAAAATCAAGAAGTACAGATCATTCGAAGATGGTTCTCGAAAGAGGGTACCCGTCAAAACTCTAGTTCGACACCTCTCTTTCGGGTCGGCTCATGAGAAAAAGGCAGCAGTGACAGAGATCCGAAAACTAACGAAAAGTAGCTCAGAACATAGAGTTGAAATAGCAGAGGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCTAACACAAGAGAATGCAATTTCTTGCATTTTGAATCTTTCACTTCATGAGCAGAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCCTACATTTCCCAAGTCCTAAAATTTGGGAGCTTGGAAGCGAGAGAGTGTGCTGCTGCGACGCTTTACAGCTTGTCGTTAGCCGACGAGAACAAGGCGGTCATCGGGGCTTCGGGCGTGATCCCGGGCCTGTTGGAAATTCTCGAGATCGGGAGTGCAAGAGGGAAGAAAGATGCAGCAAGGGCCCTGTTGAATTTGTGTATGTACCAAGGGAACAAAAGCAGGGCTGTGAAGGCTGGCATAGTCAGACCATTGTTGAAATTGCTCTCAGATTCAGATGCCTCCATGGTTGATGAAGCGCTGTATATAATGTCGGTTCTTTGCGTCCATCCGGAGGCGAAGGCAGCAATGGCGAATGCGAATTCGCTTCTCGTTCTGACCGAGGTTCTGAAGACGGGGGCGTCTCGGAGCAAGGAAAATGCAGCTGCAGTTATGTTTGTATTGTGCAAGGGAGATTTGGAGAAGCTTTCATGGTTAACCAAGCTTGGCGCAACGATACCGTTGATGATACTCGCCGAGAACGGCACGGGGAGAGCGAGGCGGAAGGCTACTTCATTGTTGGAGGAACTCAGAAGATCATGA 3276 47.44 MSLHLSNPIQLQIFPRRNGFRAKSQPSAATSSVSCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLIAHPNILNAAMLYWPMHNVLYVEGYALDRFAEGLWALKPVHQNRIGLVLDAGIEEELRIRHLQVADAARASLGLPVMEYVVTETPLVVEKWIDPKTGKSTGRIRHPASLLSAVQTLINRSKVNAVAVVGRFPDDDVEETDNYRQGMGVDALAGVEAVISHLVVKEFQVPCAHAPALSPTPLCKSLSPKSAAEELGYTFLPCVLSGLSNAPQYLSKSAESLWKDCILANDVDSVILPIDACGGDGALAFARSNQYKPLIIAVEENETVLSDTPDSLGIDVVKVSNYWEAIGVIAAHKAGIDPYSLRRNGINNTKCLSTTAPNGYPISSAPTIQLRYMIMILVQHDYNVISSNPKVIIRVFELAYVNMSNEVVGDGRRRATALQFLDLVRDFVLMSGRPIAGAGDVMQKDCTDLIRRIALLIHLAEEIMNFRRGGDNLAELNESGSSSSCSLDCLSEVVGAIQAAKRLLYAALTFSGNDDASAASTDGATKKLVYQFQYVTNRLQNALANLPYDHFCISDEVQEQVDLVRAQLRRAEKKYESMSELANKKLHSQGSVKWKVNNDVTSMSSVDYEVPESQHRPQNRDYQVGFDPEEPKASDLCMDECSSVVQSDMEDVQATKSQEEVEKSDEIMIPENFLCPISFELMVDPVIISTGQTYERSNIQRWIDKGNKTCPKTQEQLQALILTPNFLMKQLISEWCQEHNVKLEEGLTTRKIKKYRSFEDGSRKRVPVKTLVRHLSFGSAHEKKAAVTEIRKLTKSSSEHRVEIAEAGAIPQLVNLLTSEDVLTQENAISCILNLSLHEQNKRLVMLSGAVSYISQVLKFGSLEARECAAATLYSLSLADENKAVIGASGVIPGLLEILEIGSARGKKDAARALLNLCMYQGNKSRAVKAGIVRPLLKLLSDSDASMVDEALYIMSVLCVHPEAKAAMANANSLLVLTEVLKTGASRSKENAAAVMFVLCKGDLEKLSWLTKLGATIPLMILAENGTGRARRKATSLLEELRRS 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17381754 17393062 - MC04g0952 Mch4g1391 686103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1391 1091 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 855 897 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 FunFam RING-type E3 ubiquitin transferase 716 788 - -
Mch4g1391 1091 CDD RING-Ubox_PUB 717 769 IPR045210 -
Mch4g1391 1091 SMART Ubox_2 719 782 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch4g1391 1091 SUPERFAMILY RING/U-box 709 789 - -
Mch4g1391 1091 Gene3D - 911 1090 IPR011989 -
Mch4g1391 1091 FunFam RING-type E3 ubiquitin transferase 800 1091 - -
Mch4g1391 1091 SMART arm_5 1008 1048 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 SMART arm_5 844 884 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 SMART arm_5 885 925 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 SMART arm_5 967 1007 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 SMART arm_5 926 966 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 Pfam Armadillo/beta-catenin-like repeat 927 965 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 Pfam Armadillo/beta-catenin-like repeat 844 883 IPR000225 GO:0005515(InterPro)
Mch4g1391 1091 ProSiteProfiles U-box domain profile. 715 789 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch4g1391 1091 Pfam Protein of unknown function (DUF3326) 50 389 IPR021763 -
Mch4g1391 1091 Gene3D - 807 909 IPR011989 -
Mch4g1391 1091 Pfam U-box domain 716 787 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch4g1391 1091 PANTHER OS01G0127400 PROTEIN 21 411 IPR021763 -
Mch4g1391 1091 SUPERFAMILY ARM repeat 815 1088 IPR016024 -
Mch4g1391 1091 Coils Coil 601 628 - -
Mch4g1391 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 798 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1391 Mch-Chr4:17381754 Mch9g1301 Mch-Chr9:15216303 1.91E-95 dispersed
Mch6g1095 Mch-Chr6:7990324 Mch4g1391 Mch-Chr4:17381754 1.14E-06 dispersed
Mch4g1391 Mch-Chr4:17381754 Mch3g1460 Mch-Chr3:16894727 3.28E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1391 - - - 0.0