Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1417 ATGAAGAGGGAGCATCATCAGCTGCATCCCCCTCCGGAGCCTCCTTCCATGGCTGCCGCCTCTAATGGTGGAAAAGCAAAGCTCTGGGAGGAGGACGCCCACCTCGACGGTGGAATGGACGAGCTTCTTGCGGTTCTCGGGTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCCCACAAGCTTGAACAGCTTGAACAAGCCATGGGTCAAGTTCAGGATACCGGGCTTTCGCATCTCGCTTTCGACACTGTTCATCATAATCCTTCTGATATATCCACTTGGCTTGAGAGTATGATCTCTGAGCTTAATCCGCCGCCTAATTTTGACCCGGCCTTGCCTGCGCCGCCGACGTTGGATGAGTCGTCGTTCTTGGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGAACCGCAACGGCAAACCAGCAGCCGGATTTTCGAGGTGTCCTCCAGCTCTGATTACGACCTCAAGGCTATTACGAGCAGCGCTAAGCGTTTGAAACCCTCGTCCGAGTCGGATTCGGATTTCTTCTCCAACTCGCCGATTGGGACGTCCGATTCCGCGACTCGCCCAGTCCTTCTCGTTGACTCGCAAGAGAACGGAATTCAACTGGTTCATGCTCTGATGGCTTGCGCAGAAGCCGTTCAGCAAAACAATCTGAATCTCGCGGAGGCTCTGGTGAAGCGAATCAGTTACTTGGCGGGTTCTCAAGCCGGAGCGATGCGGAAGGTCGCCACGTACTTCGCCGAAGCATTGGCTCGCCGAATCTACAGACTCTGCCCTGAGAATCCGCTCGATCACACAATCTCCGATATGCTTCAGATGCATTTCTACGAGAGCTGTCCGTATCTGAAATTCGCCCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGTAAGAATCGCGTTCACGTAATCGACTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTACGGCCGAGCGGTCCCCCGGTGTTCCGATTAACCGGAATCGGGCCGCCGGCGCCGGATAACTCCGATTACCTGCAAGAAGTCGGCTGGAAACTGGCTCAGTTGGCCGAAACGATCCACGTGGAGTTCGAGTACAGAGGATTCGTGGCGAACAGTTTGGCGGATCTGGACGCGTCTATGCTGGAGCTCCGGCCGAGCGAGGGGGAATCGGTGGTGGTGAACTCGGTGTTCGAGATGCACAAACTTCTGGGCCGGCCGGGCGCCATTGAGAAGGTTCTGTCGGTGGTGAAACAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAAGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCACTCCACTACTACTCGACGCTTTTCGACTCGCTGGAGGGATCGGTTAACAACCAGGACAAAATCATGTCCGAAATGTACCTCGGGAAGCAAATCTGCAACGTGGTGGCTTGCGAAGGCCCCGACCGAGTCGAGCGCCACGAGACGCTGGCTCAGTGGCGGGCTCGGTTTTCCTCCGCCGGGTTCGAGCCGGTCCACCTCGGCTCGAACGCATTCAAGCAAGCCAGCATGCTCCTCGCCCTCTTCGGCAGCGGAGAAGGGTATCAAGTTCAAGAGAACAACGGATCACTAACACTCGGGTGGCACACACGCCCACTCATCGCCACCTCCGCCTGGAAACTCGGCAACAACCCGGTGGCAGCTCAC 1725 56.41 MKREHHQLHPPPEPPSMAAASNGGKAKLWEEDAHLDGGMDELLAVLGYKVKSSDMAEVAHKLEQLEQAMGQVQDTGLSHLAFDTVHHNPSDISTWLESMISELNPPPNFDPALPAPPTLDESSFLAPAESSTITSIDYEPQRQTSSRIFEVSSSSDYDLKAITSSAKRLKPSSESDSDFFSNSPIGTSDSATRPVLLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRISYLAGSQAGAMRKVATYFAEALARRIYRLCPENPLDHTISDMLQMHFYESCPYLKFAHFTANQAILEAFEGKNRVHVIDFSMNQGMQWPALIQALALRPSGPPVFRLTGIGPPAPDNSDYLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSEGESVVVNSVFEMHKLLGRPGAIEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSVNNQDKIMSEMYLGKQICNVVACEGPDRVERHETLAQWRARFSSAGFEPVHLGSNAFKQASMLLALFGSGEGYQVQENNGSLTLGWHTRPLIATSAWKLGNNPVAAH 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17650390 17652114 - MC04g0974 Mch4g1417 686129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1417 575 SMART DELLA_2 40 113 - -
Mch4g1417 575 Pfam GRAS domain family 207 566 IPR005202 -
Mch4g1417 575 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 565 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Mch4g1417 575 MobiDBLite consensus disorder prediction 166 185 - -
Mch4g1417 575 FunFam DELLA protein GAI 38 103 - -
Mch4g1417 575 ProSiteProfiles GRAS family profile. 198 566 IPR005202 -
Mch4g1417 575 Coils Coil 55 75 - -
Mch4g1417 575 MobiDBLite consensus disorder prediction 1 25 - -
Mch4g1417 575 Pfam Transcriptional regulator DELLA protein N terminal 40 107 IPR021914 -
Mch4g1417 575 Gene3D - 38 103 IPR038088 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1417 K14494 - - csv:101204164 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0888 Mch-Chr2:6044081 Mch4g1417 Mch-Chr4:17650390 4.54E-46 dispersed
Mch4g1417 Mch-Chr4:17650390 Mch4g1687 Mch-Chr4:20041674 1.25E-231 dispersed
Mch4g1417 Mch-Chr4:17650390 Mch1g1496 Mch-Chr1:16458092 2.57E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1847 . 64 740 GRAS Transcription Factor Family AT2G37650 55.0 7.0e-200 694.1
Mch9g0222 . 142 529 GRAS Transcription Factor Family AT3G13840 58.0 2.4e-125 446.0
Mch5g1847 . 276 741 GRAS Transcription Factor Family AT3G46600 50.4 4.5e-125 445.3
Mch1g1273 . 45 460 GRAS Transcription Factor Family AT3G49950 62.3 1.2e-138 490.0
Mch2g0888 . 121 787 GRAS Transcription Factor Family AT1G07530 50.3 1.5e-179 626.7
Mch10g0747 . 66 523 GRAS Transcription Factor Family AT4G36710 54.4 1.1e-130 463.8
Mch10g0967 . 22 438 GRAS Transcription Factor Family AT5G41920 67.3 5.9e-151 530.8
Mch1g0582 . 447 823 GRAS Transcription Factor Family AT5G41920 56.4 4.0e-115 411.8
Mch1g1496 . 1 612 GRAS Transcription Factor Family AT5G66770 58.0 3.8e-183 638.3
Mch10g0732 . 1 611 GRAS Transcription Factor Family AT5G66770 58.7 8.8e-180 627.1
Mch2g0480 . 57 546 GRAS Transcription Factor Family AT1G50600 59.9 1.3e-166 583.2
Mch1g1701 . 111 550 GRAS Transcription Factor Family AT1G50600 56.5 1.4e-139 493.4
Mch11g1144 . 215 585 GRAS Transcription Factor Family AT1G50600 62.5 3.1e-136 482.3
Mch4g1417 . 38 570 GRAS Transcription Factor Family AT1G14920 66.5 1.0e-203 706.4
Mch4g1687 . 67 608 GRAS Transcription Factor Family AT1G14920 60.9 6.8e-179 624.0
Mch8g2309 . 51 581 GRAS Transcription Factor Family AT1G14920 60.4 7.0e-176 614.0
Mch4g1687 . 67 605 GRAS Transcription Factor Family AT1G66350 61.4 4.6e-177 617.8
Mch8g2309 . 1 578 GRAS Transcription Factor Family AT1G66350 58.0 1.3e-174 609.8
Mch4g1417 . 1 568 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-170 596.3
Mch2g0888 . 253 788 GRAS Transcription Factor Family AT1G07520 50.5 3.2e-144 508.8
Mch2g0480 . 19 546 GRAS Transcription Factor Family AT5G48150 65.4 5.4e-191 664.1
Mch1g1701 . 16 550 GRAS Transcription Factor Family AT5G48150 51.4 3.0e-149 525.4
Mch11g1144 . 108 585 GRAS Transcription Factor Family AT5G48150 51.9 2.4e-138 489.2
Mch11g1412 . 184 576 GRAS Transcription Factor Family AT5G48150 53.1 4.2e-119 425.2
Mch4g1417 . 40 567 GRAS Transcription Factor Family AT2G01570 68.7 4.8e-210 727.6
Mch4g1687 . 69 606 GRAS Transcription Factor Family AT2G01570 61.3 5.5e-182 634.4
Mch8g2309 . 52 579 GRAS Transcription Factor Family AT2G01570 61.2 4.1e-177 618.2
Mch4g1687 . 67 605 GRAS Transcription Factor Family AT1G66350 61.4 4.6e-177 617.8
Mch8g2309 . 1 578 GRAS Transcription Factor Family AT1G66350 58.0 1.3e-174 609.8
Mch4g1417 . 1 568 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-170 596.3
Mch4g1687 . 69 606 GRAS Transcription Factor Family AT3G03450 60.3 4.8e-172 601.3
Mch4g1417 . 40 567 GRAS Transcription Factor Family AT3G03450 59.6 5.0e-169 591.3
Mch8g2309 . 52 579 GRAS Transcription Factor Family AT3G03450 60.5 1.9e-168 589.3
Mch4g1687 . 68 608 GRAS Transcription Factor Family AT5G17490 55.9 2.1e-156 549.3
Mch4g1417 . 36 567 GRAS Transcription Factor Family AT5G17490 56.5 1.8e-155 546.2
Mch8g2309 . 53 580 GRAS Transcription Factor Family AT5G17490 56.0 1.4e-149 526.6
Mch11g1412 . 1 576 GRAS Transcription Factor Family AT1G21450 56.1 8.1e-173 604.0
Mch2g0480 . 168 546 GRAS Transcription Factor Family AT1G21450 53.2 2.2e-117 419.9
Mch11g1144 . 217 585 GRAS Transcription Factor Family AT1G21450 50.3 1.1e-105 380.9
Mch5g1847 . 292 741 GRAS Transcription Factor Family AT5G59450 50.8 2.2e-125 446.4
Mch1g1701 . 1 549 GRAS Transcription Factor Family AT4G17230 58.4 6.3e-177 617.5
Mch2g0480 . 1 545 GRAS Transcription Factor Family AT4G17230 50.5 9.8e-146 513.8
Mch11g1144 . 212 585 GRAS Transcription Factor Family AT4G17230 51.9 5.6e-109 391.7
Mch2g0480 . 134 546 GRAS Transcription Factor Family AT2G04890 66.0 7.1e-160 560.5
Mch11g1144 . 215 585 GRAS Transcription Factor Family AT2G04890 60.6 1.3e-129 459.9
Mch1g1701 . 170 550 GRAS Transcription Factor Family AT2G04890 58.8 2.6e-125 445.7
Mch6g1194 . 1 471 GRAS Transcription Factor Family AT1G50420 68.2 1.2e-179 626.3
Mch9g1760 . 1 461 GRAS Transcription Factor Family AT1G50420 60.8 3.1e-154 542.0
Mch10g1559 . 407 775 GRAS Transcription Factor Family AT4G00150 55.2 9.8e-104 374.4
Mch1g1496 . 1 612 GRAS Transcription Factor Family AT3G50650 51.1 5.3e-155 544.7
Mch10g0732 . 1 611 GRAS Transcription Factor Family AT3G50650 53.7 6.5e-153 537.7
Mch1g0582 . 176 821 GRAS Transcription Factor Family AT3G54220 61.5 1.6e-201 699.5
Mch10g0967 . 71 436 GRAS Transcription Factor Family AT3G54220 63.7 1.3e-134 477.2
Mch1g1285 . 111 498 GRAS Transcription Factor Family AT4G37650 69.1 1.9e-157 552.7
Mch2g1341 . 2 386 GRAS Transcription Factor Family AT4G37650 58.8 4.9e-129 458.4
Mch7g0125 . 56 442 GRAS Transcription Factor Family AT4G37650 52.0 1.6e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43195 PF03514 GRAS 2.70E-138 CL0063 Mch TF